JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
}
@Test(groups = "Functional")
- public void testSetStatusReturnsPosOrMinusOne()
+ public void testSetStatusReturnsNearestResiduePosition()
{
- SequenceI seq1 = new Sequence("Seq1", "ABCDEFGHIJ");
- SequenceI seq2 = new Sequence("Seq2", "AB--EFGHIJ");
+ SequenceI seq1 = new Sequence("Seq1", "AACDE");
+ SequenceI seq2 = new Sequence("Seq2", "AA--E");
AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
AlignFrame alignFrame = new AlignFrame(al, al.getWidth(),
al.getHeight());
AlignmentI visAl = alignFrame.getViewport().getAlignment();
+
// Test either side of gap
assertEquals(
alignFrame.alignPanel.getSeqPanel().setStatusMessage(
visAl.getSequenceAt(1), 1, 1), 2);
+ assertEquals(alignFrame.statusBar.getText(),
+ "Sequence 2 ID: Seq2 Residue: ALA (2)");
assertEquals(
alignFrame.alignPanel.getSeqPanel().setStatusMessage(
visAl.getSequenceAt(1), 4, 1), 3);
- // Test gaps are -1
+ assertEquals(alignFrame.statusBar.getText(),
+ "Sequence 2 ID: Seq2 Residue: GLU (3)");
+ // no status message at a gap, returns next residue position to the right
assertEquals(
alignFrame.alignPanel.getSeqPanel().setStatusMessage(
- visAl.getSequenceAt(1), 2, 1), -1);
+ visAl.getSequenceAt(1), 2, 1), 3);
+ assertEquals(alignFrame.statusBar.getText(), "Sequence 2 ID: Seq2");
assertEquals(
alignFrame.alignPanel.getSeqPanel().setStatusMessage(
- visAl.getSequenceAt(1), 3, 1), -1);
+ visAl.getSequenceAt(1), 3, 1), 3);
+ assertEquals(alignFrame.statusBar.getText(), "Sequence 2 ID: Seq2");
+ }
+
+ @Test(groups = "Functional")
+ public void testAmbiguousAminoAcidGetsStatusMessage()
+ {
+ SequenceI seq1 = new Sequence("Seq1", "ABCDE");
+ SequenceI seq2 = new Sequence("Seq2", "AB--E");
+ AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
+ AlignFrame alignFrame = new AlignFrame(al, al.getWidth(),
+ al.getHeight());
+ AlignmentI visAl = alignFrame.getViewport().getAlignment();
+
+ assertEquals(
+ alignFrame.alignPanel.getSeqPanel().setStatusMessage(
+ visAl.getSequenceAt(1), 1, 1), 2);
+ assertEquals(alignFrame.statusBar.getText(),
+ "Sequence 2 ID: Seq2 Residue: B (2)");
}
}