+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.schemes;
-import static org.testng.Assert.assertNull;
-import static org.testng.Assert.assertSame;
+import static org.testng.Assert.assertEquals;
import static org.testng.Assert.assertTrue;
-import jalview.datamodel.Alignment;
-import jalview.datamodel.AlignmentI;
-import jalview.datamodel.Sequence;
-import jalview.datamodel.SequenceI;
-
import org.testng.annotations.Test;
public class JalviewColourSchemeTest
{
@Test(groups = "Functional")
- public void testForName()
+ public void testGetSchemeClass()
{
- assertSame(JalviewColourScheme.Clustal,
- JalviewColourScheme.forName("Clustal"));
- assertSame(JalviewColourScheme.Clustal,
- JalviewColourScheme.forName("CLUSTAL"));
- assertSame(JalviewColourScheme.Blosum62,
- JalviewColourScheme.forName("Blosum62"));
- assertSame(JalviewColourScheme.PID,
- JalviewColourScheme.forName("% Identity"));
- assertSame(JalviewColourScheme.Hydrophobic,
- JalviewColourScheme.forName("Hydrophobic"));
- assertSame(JalviewColourScheme.Zappo,
- JalviewColourScheme.forName("Zappo"));
- assertSame(JalviewColourScheme.Taylor,
- JalviewColourScheme.forName("Taylor"));
- assertSame(JalviewColourScheme.Helix,
- JalviewColourScheme.forName("Helix Propensity"));
- assertSame(JalviewColourScheme.Strand,
- JalviewColourScheme.forName("Strand Propensity"));
- assertSame(JalviewColourScheme.Turn,
- JalviewColourScheme.forName("Turn Propensity"));
- assertSame(JalviewColourScheme.Buried,
- JalviewColourScheme.forName("Buried Index"));
- assertSame(JalviewColourScheme.Nucleotide,
- JalviewColourScheme.forName("Nucleotide"));
- assertSame(JalviewColourScheme.PurinePyrimidine,
- JalviewColourScheme.forName("Purine/Pyrimidine"));
- assertSame(JalviewColourScheme.TCoffee,
- JalviewColourScheme.forName("T-Coffee Scores"));
- assertSame(JalviewColourScheme.RNAHelices,
- JalviewColourScheme.forName("RNA Helices"));
- // assertSame(JalviewColourScheme.RNAInteraction,
- // JalviewColourScheme.forName("RNA Interaction type"));
- assertSame(JalviewColourScheme.UserDefined,
- JalviewColourScheme.forName("User Defined"));
-
- assertNull(JalviewColourScheme.forName("PID"));
- assertNull(JalviewColourScheme.forName(""));
- assertNull(JalviewColourScheme.forName(null));
+ assertTrue(JalviewColourScheme.Clustal
+ .getSchemeClass() == ClustalxColourScheme.class);
+ assertTrue(JalviewColourScheme.Blosum62
+ .getSchemeClass() == Blosum62ColourScheme.class);
+ assertTrue(JalviewColourScheme.PID
+ .getSchemeClass() == PIDColourScheme.class);
+ assertTrue(JalviewColourScheme.Hydrophobic
+ .getSchemeClass() == HydrophobicColourScheme.class);
+ assertTrue(JalviewColourScheme.Zappo
+ .getSchemeClass() == ZappoColourScheme.class);
+ assertTrue(JalviewColourScheme.Taylor
+ .getSchemeClass() == TaylorColourScheme.class);
+ assertTrue(JalviewColourScheme.Helix
+ .getSchemeClass() == HelixColourScheme.class);
+ assertTrue(JalviewColourScheme.Strand
+ .getSchemeClass() == StrandColourScheme.class);
+ assertTrue(JalviewColourScheme.Turn
+ .getSchemeClass() == TurnColourScheme.class);
+ assertTrue(JalviewColourScheme.Buried
+ .getSchemeClass() == BuriedColourScheme.class);
+ assertTrue(JalviewColourScheme.Nucleotide
+ .getSchemeClass() == NucleotideColourScheme.class);
+ assertTrue(JalviewColourScheme.PurinePyrimidine
+ .getSchemeClass() == PurinePyrimidineColourScheme.class);
+ assertTrue(JalviewColourScheme.TCoffee
+ .getSchemeClass() == TCoffeeColourScheme.class);
+ assertTrue(JalviewColourScheme.RNAHelices
+ .getSchemeClass() == RNAHelicesColour.class);
+ assertTrue(JalviewColourScheme.IdColour
+ .getSchemeClass() == IdColourScheme.class);
}
@Test(groups = "Functional")
- public void testGetColourScheme()
+ public void testToString()
{
- SequenceI seq = new Sequence("Seq1", "abcd");
- AlignmentI al = new Alignment(new SequenceI[] { seq });
- assertTrue(JalviewColourScheme.Clustal.getColourScheme(al) instanceof ClustalxColourScheme);
- assertTrue(JalviewColourScheme.Blosum62.getColourScheme(al) instanceof Blosum62ColourScheme);
- assertTrue(JalviewColourScheme.PID.getColourScheme(al) instanceof PIDColourScheme);
- assertTrue(JalviewColourScheme.Hydrophobic.getColourScheme(al) instanceof HydrophobicColourScheme);
- assertTrue(JalviewColourScheme.Zappo.getColourScheme(al) instanceof ZappoColourScheme);
- assertTrue(JalviewColourScheme.Taylor.getColourScheme(al) instanceof TaylorColourScheme);
- assertTrue(JalviewColourScheme.Helix.getColourScheme(al) instanceof HelixColourScheme);
- assertTrue(JalviewColourScheme.Strand.getColourScheme(al) instanceof StrandColourScheme);
- assertTrue(JalviewColourScheme.Turn.getColourScheme(al) instanceof TurnColourScheme);
- assertTrue(JalviewColourScheme.Buried.getColourScheme(al) instanceof BuriedColourScheme);
- assertTrue(JalviewColourScheme.Nucleotide.getColourScheme(al) instanceof NucleotideColourScheme);
- assertTrue(JalviewColourScheme.PurinePyrimidine.getColourScheme(al) instanceof PurinePyrimidineColourScheme);
- assertTrue(JalviewColourScheme.TCoffee.getColourScheme(al) instanceof TCoffeeColourScheme);
- assertTrue(JalviewColourScheme.RNAHelices.getColourScheme(al) instanceof RNAHelicesColour);
- // assertTrue(JalviewColourScheme.RNAInteraction.getColourScheme(al)
- // instanceof RNAInteractionColourScheme);
- assertTrue(JalviewColourScheme.UserDefined.getColourScheme(al) instanceof UserColourScheme);
+ assertEquals(JalviewColourScheme.Clustal.toString(), "Clustal");
+ assertEquals(JalviewColourScheme.Blosum62.toString(), "Blosum62");
+ assertEquals(JalviewColourScheme.PID.toString(), "% Identity");
+ assertEquals(JalviewColourScheme.Zappo.toString(), "Zappo");
+ assertEquals(JalviewColourScheme.Taylor.toString(), "Taylor");
+ assertEquals(JalviewColourScheme.Hydrophobic.toString(), "Hydrophobic");
+ assertEquals(JalviewColourScheme.Helix.toString(), "Helix Propensity");
+ assertEquals(JalviewColourScheme.Strand.toString(),
+ "Strand Propensity");
+ assertEquals(JalviewColourScheme.Turn.toString(), "Turn Propensity");
+ assertEquals(JalviewColourScheme.Buried.toString(), "Buried Index");
+ assertEquals(JalviewColourScheme.Nucleotide.toString(), "Nucleotide");
+ assertEquals(JalviewColourScheme.PurinePyrimidine.toString(),
+ "Purine/Pyrimidine");
+ assertEquals(JalviewColourScheme.TCoffee.toString(), "T-Coffee Scores");
+ assertEquals(JalviewColourScheme.RNAHelices.toString(), "RNA Helices");
+ assertEquals(JalviewColourScheme.IdColour.toString(), "Sequence ID");
}
}