{
SequenceI seq = new Sequence("eightypercent", "agctuAGCPV");
assertFalse(Comparison.isNucleotide(new SequenceI[] { seq }));
- assertFalse(Comparison.isNucleotide(new SequenceI[][] { new SequenceI[]
- { seq } }));
+ assertFalse(
+ Comparison.isNucleotide(new SequenceI[][]
+ { new SequenceI[] { seq } }));
seq = new Sequence("eightyfivepercent", "agctuAGCPVagctuAGCUV");
assertFalse(Comparison.isNucleotide(new SequenceI[] { seq }));
seq = new Sequence("DNA", "ACTugGCCAG");
SequenceI seq2 = new Sequence("Protein", "FLIMVSPTYW");
/*
- * 90% DNA:
+ * 90% DNA but one protein sequence - expect false
*/
- assertTrue(Comparison.isNucleotide(new SequenceI[] { seq, seq, seq,
- seq, seq, seq, seq, seq, seq, seq2 }));
- assertTrue(Comparison.isNucleotide(new SequenceI[][] {
- new SequenceI[] { seq }, new SequenceI[] { seq, seq, seq },
- new SequenceI[] { seq, seq, seq, seq, seq, seq2 } }));
+ assertFalse(
+ Comparison.isNucleotide(new SequenceI[]
+ { seq, seq, seq, seq, seq, seq, seq, seq, seq, seq2 }));
+ assertFalse(
+ Comparison.isNucleotide(new SequenceI[][]
+ { new SequenceI[] { seq }, new SequenceI[] { seq, seq, seq },
+ new SequenceI[]
+ { seq, seq, seq, seq, seq, seq2 } }));
/*
- * 80% DNA:
+ * 80% DNA but one protein sequence - Expect false
*/
- assertFalse(Comparison.isNucleotide(new SequenceI[] { seq, seq, seq,
- seq, seq, seq, seq, seq, seq2, seq2 }));
- assertFalse(Comparison.isNucleotide(new SequenceI[][] { new SequenceI[]
- { seq }, new SequenceI[] { seq, seq, seq },
- new SequenceI[] { seq, seq, seq, seq, seq2, seq2, null } }));
+ assertFalse(
+ Comparison.isNucleotide(new SequenceI[]
+ { seq, seq, seq, seq, seq, seq, seq, seq, seq2, seq2 }));
+ assertFalse(
+ Comparison.isNucleotide(new SequenceI[][]
+ { new SequenceI[] { seq }, new SequenceI[] { seq, seq, seq },
+ new SequenceI[]
+ { seq, seq, seq, seq, seq2, seq2, null } }));
seq = new Sequence("ProteinThatLooksLikeDNA", "WYATGCCTGAgtcgt");
// 12/14 = 85.7%