*/
package jalview.ws.dbsources;
+import static org.testng.Assert.assertFalse;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertNotNull;
import static org.testng.AssertJUnit.assertNull;
import static org.testng.AssertJUnit.assertTrue;
+import jalview.datamodel.DBRefEntry;
+import jalview.datamodel.DBRefSource;
import jalview.datamodel.SequenceI;
import jalview.gui.JvOptionPane;
+import jalview.util.DBRefUtils;
import jalview.xml.binding.uniprot.DbReferenceType;
import jalview.xml.binding.uniprot.Entry;
import jalview.xml.binding.uniprot.FeatureType;
assertEquals(6, seq.getDBRefs().size()); // 2*Uniprot, PDB, PDBsum, 2*EMBL
assertEquals(seq.getSequenceAsString(),
seq.createDatasetSequence().getSequenceAsString());
+ assertEquals(2,seq.getPrimaryDBRefs().size());
+ List<DBRefEntry> res = DBRefUtils.searchRefs(seq.getPrimaryDBRefs(), "A9CKP4");
+ assertEquals(1,res.size());
+ assertTrue(res.get(0).isCanonical());
+ res = DBRefUtils.searchRefsForSource(seq.getDBRefs(), DBRefSource.UNIPROT);
+ assertEquals(2,res.size());
+ /*
+ * NB this test fragile - relies on ordering being preserved
+ */
+ assertTrue(res.get(0).isCanonical());
+ assertFalse(res.get(1).isCanonical());
}
/**