import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceI;
import jalview.gui.JvOptionPane;
-import jalview.io.AppletFormatAdapter;
+import jalview.io.DataSourceType;
import jalview.structure.StructureMapping;
import jalview.xml.binding.sifts.Entry.Entity;
try
{
pdbFile = new PDBfile(false, false, false, "test/jalview/io/"
- + testPDBId + ".pdb", AppletFormatAdapter.FILE);
+ + testPDBId + ".pdb", DataSourceType.FILE);
siftsClient = new SiftsClient(pdbFile);
} catch (Exception e)
{
try
{
pdbFile = new PDBfile(false, false, false, "test/jalview/io/2nq2"
- + ".pdb", AppletFormatAdapter.FILE);
+ + ".pdb", DataSourceType.FILE);
siftsClientX = new SiftsClient(pdbFile);
} catch (Exception e)
{
try
{
pdbFile = new PDBfile(false, false, false,
- "test/jalview/io/3ucu.cif", AppletFormatAdapter.FILE);
+ "test/jalview/io/3ucu.cif", DataSourceType.FILE);
siftsClientX = new SiftsClient(pdbFile);
} catch (Exception e)
{