+json_simple-1.1.jar : Apache 2.0 license : downloaded from https://code.google.com/p/json-simple/downloads/list (will move to 1.1.1 version when jalview is mavenised and osgi-ised)
+jfreesvg-2.1.jar : GPL v3 licensed library from the JFree suite: http://www.jfree.org/jfreesvg/
+
+quaqua: v.8.0 (latest stable) by Randel S Hofer. LGPL and BSD Modified license: downloaded from http://www.randelshofer.ch/quaqua/
+
+lib/htsjdk-1.120-SNAPSHOT.jar: built from maven master at https://github.com/samtools/htsjdk MIT License to Broad Institute
+
+
+Additional dependencies
+
+examples/javascript/deployJava.js : http://java.com/js/deployJava.js
+examples/javascript/jquery*.js : BSD license
+examples/javascript/jshashtable-2.1.js : Apache License
+
+Tools not bundled with Jalview source
+jbake (http://jbake.org MIT license) was used to build the JalviewLite examples pages found in the examples directory.