- inputs.dir("$classes")
- outputs.file("$jalviewDir/$packageDir/$archiveName")
-}
-
-task copyJars(type: Copy) {
- from fileTree("$classes").include("**/*.jar").include("*.jar").files
- into "$jalviewDir/$packageDir"
-}
-
-// doing a Sync instead of Copy as Copy doesn't deal with "outputs" very well
-task syncJars(type: Sync) {
- from fileTree("$jalviewDir/$libDistDir").include("**/*.jar").include("*.jar").files
- into "$jalviewDir/$packageDir"
- preserve {
- include jar.archiveName
- }
-}
-
-task makeDist {
- group = "build"
- description = "Put all required libraries in dist"
- // order of "cleanPackageDir", "copyJars", "jar" important!
- jar.mustRunAfter cleanPackageDir
- syncJars.mustRunAfter cleanPackageDir
- dependsOn cleanPackageDir
- dependsOn syncJars
- dependsOn jar
- outputs.dir("$jalviewDir/$packageDir")
-}
-
-task cleanDist {
- dependsOn cleanPackageDir
- dependsOn cleanTest
- dependsOn clean
-}
-
-shadowJar {
- group = "distribution"
- if (buildDist) {
- dependsOn makeDist
- }
- from ("$jalviewDir/$libDistDir") {
- include("*.jar")
- }
- manifest {
- attributes 'Implementation-Version': JALVIEW_VERSION
- }
- mainClassName = shadowJarMainClass
- mergeServiceFiles()
- classifier = "all-"+JALVIEW_VERSION+"-j"+JAVA_VERSION
- minimize()
-}
-
-task getdownWebsite() {
- group = "distribution"
- description = "Create the getdown minimal app folder, and website folder for this version of jalview. Website folder also used for offline app installer"
- if (buildDist) {
- dependsOn makeDist
- }
-
- // clean the getdown website and files dir before creating getdown folders
- delete project.ext.getdownWebsiteDir
- delete project.ext.getdownFilesDir
-
- def getdownWebsiteResourceFilenames = []
- def getdownTextString = ""
- def getdownResourceDir = project.ext.getdownResourceDir
- def getdownAppDir = project.ext.getdownAppDir
- def getdownResourceFilenames = []
-
- doFirst {
- copy {
- from buildProperties
- rename(buildPropertiesFile, getdown_build_properties)
- into project.ext.getdownAppDir
- }
- getdownWebsiteResourceFilenames += getdown_app_dir+"/"+getdown_build_properties
-
- // go through properties looking for getdown_txt_...
- def props = project.properties.sort { it.key }
- if (getdown_alt_java_min_version.length() > 0) {
- props.put("getdown_txt_java_min_version", getdown_alt_java_min_version)
- }
- if (getdown_alt_java_max_version.length() > 0) {
- props.put("getdown_txt_java_max_version", getdown_alt_java_max_version)
- }
- props.put("getdown_txt_multi_java_location", getdown_alt_multi_java_location)
-
- props.put("getdown_txt_appbase", getdown_app_base)
- props.each{ prop, val ->
- if (prop.startsWith("getdown_txt_") && val != null) {
- if (prop.startsWith("getdown_txt_multi_")) {
- def key = prop.substring(18)
- val.split(",").each{ v ->
- def line = key + " = " + v + "\n"
- getdownTextString += line
- }
- } else {
- // file values rationalised
- if (val.indexOf('/') > -1 || prop.startsWith("getdown_txt_resource")) {
- def r = null
- if (val.indexOf('/') == 0) {
- // absolute path
- r = file(val)
- } else if (val.indexOf('/') > 0) {
- // relative path (relative to jalviewDir)
- r = file( jalviewDir + '/' + val )
- }
- if (r.exists()) {
- val = getdown_resource_dir + '/' + r.getName()
- getdownWebsiteResourceFilenames += val
- getdownResourceFilenames += r.getPath()
- }
- }
- if (! prop.startsWith("getdown_txt_resource")) {
- def line = prop.substring(12) + " = " + val + "\n"
- getdownTextString += line
- }
- }
- }
- }
-
- getdownWebsiteResourceFilenames.each{ filename ->
- getdownTextString += "resource = "+filename+"\n"
- }
- getdownResourceFilenames.each{ filename ->
- copy {
- from filename
- into project.ext.getdownResourceDir
- }
- }
-
- def codeFiles = []
- fileTree(file(packageDir)).each{ f ->
- if (f.isDirectory()) {
- def files = fileTree(dir: f, include: ["*"]).getFiles()
- codeFiles += files
- } else if (f.exists()) {
- codeFiles += f
- }
- }
- codeFiles.sort().each{f ->
- def line = "code = " + getdown_app_dir + '/' + f.getName() + "\n"
- getdownTextString += line
- copy {
- from f.getPath()
- into project.ext.getdownAppDir
- }
- }
-
- // NOT USING MODULES YET, EVERYTHING SHOULD BE IN dist
- /*
- if (JAVA_VERSION.equals("11")) {
- def j11libFiles = fileTree(dir: "$jalviewDir/$j11libDir", include: ["*.jar"]).getFiles()
- j11libFiles.sort().each{f ->
- def line = "code = " + getdown_j11lib_dir + '/' + f.getName() + "\n"
- getdownTextString += line
- copy {
- from f.getPath()
- into project.ext.getdownJ11libDir
- }
- }
- }
- */
-
- // getdown-launcher.jar should not be in main application class path so the main application can move it when updated. Listed as a resource so it gets updated.
- //getdownTextString += "class = " + file(getdownLauncher).getName() + "\n"
- getdownTextString += "resource = " + getdown_launcher_new + "\n"
- getdownTextString += "class = " + mainClass + "\n"
-
- def getdown_txt = file(project.ext.getdownWebsiteDir + "/getdown.txt")
- getdown_txt.write(getdownTextString)
-
- def launch_jvl = file(project.ext.getdownWebsiteDir + "/" + getdown_launch_jvl)
- launch_jvl.write("appbase="+props.get("getdown_txt_appbase"))
-
- copy {
- from getdownLauncher
- rename(file(getdownLauncher).getName(), getdown_launcher_new)
- into project.ext.getdownWebsiteDir
- }
-
- copy {
- from getdownLauncher
- if (file(getdownLauncher).getName() != getdown_launcher) {
- rename(file(getdownLauncher).getName(), getdown_launcher)
- }
- into project.ext.getdownWebsiteDir
- }
-
- if (! (CHANNEL.startsWith("ARCHIVE") || CHANNEL.startsWith("DEVELOP"))) {
- copy {
- from getdown_txt
- from getdownLauncher
- from getdownWebsiteDir+"/"+getdown_build_properties
- if (file(getdownLauncher).getName() != getdown_launcher) {
- rename(file(getdownLauncher).getName(), getdown_launcher)
- }
- into getdownInstallDir
- }
-
- copy {
- from getdownInstallDir
- into getdownFilesInstallDir
- }
- }
-
- copy {
- from getdown_txt
- from launch_jvl
- from getdownLauncher
- from getdownWebsiteDir+"/"+getdown_build_properties
- if (file(getdownLauncher).getName() != getdown_launcher) {
- rename(file(getdownLauncher).getName(), getdown_launcher)
- }
- into getdownFilesDir
- }
-
- copy {
- from getdownResourceDir
- into project.ext.getdownFilesDir + '/' + getdown_resource_dir
- }
- }
-
- if (buildDist) {
- inputs.dir(jalviewDir + '/' + packageDir)
- }
- outputs.dir(project.ext.getdownWebsiteDir)
- outputs.dir(project.ext.getdownFilesDir)
-}
-
-task getdownDigest(type: JavaExec) {
- group = "distribution"
- description = "Digest the getdown website folder"
- dependsOn getdownWebsite
- doFirst {
- classpath = files(getdownWebsiteDir + '/' + getdown_launcher)
- }
- main = "com.threerings.getdown.tools.Digester"
- args project.ext.getdownWebsiteDir
- inputs.dir(project.ext.getdownWebsiteDir)
- outputs.file(project.ext.getdownWebsiteDir + '/' + "digest2.txt")
-}
-
-task getdown() {
- group = "distribution"
- description = "Create the minimal and full getdown app folder for installers and website and create digest file"
- dependsOn getdownDigest
- doLast {
- if (reportRsyncCommand) {
- def fromDir = getdownWebsiteDir + (getdownWebsiteDir.endsWith("/")?"":"/")
- def toDir = getdown_rsync_dest + "/" + getdownDir + (getdownDir.endsWith("/")?"":"/")
- println "LIKELY RSYNC COMMAND:"
- println "mkdir -p '$toDir'\nrsync -avh --delete '$fromDir' '$toDir'"
- if (RUNRSYNC == "true") {
- exec {
- commandLine "mkdir", "-p", toDir
- }
- exec {
- commandLine "rsync", "-avh", "--delete", fromDir, toDir
- }
- }
- }
- }
-}
-
-clean {
- delete project.ext.getdownWebsiteDir
- delete project.ext.getdownFilesDir
-}
-
-install4j {
- def install4jHomeDir = "/opt/install4j"
- def hostname = "hostname".execute().text.trim()
- if (hostname.equals("jv-bamboo")) {
- install4jHomeDir = System.getProperty("user.home")+"/buildtools/install4j"
- } else if (OperatingSystem.current().isMacOsX()) {
- install4jHomeDir = '/Applications/install4j.app/Contents/Resources/app'
- if (! file(install4jHomeDir).exists()) {
- install4jHomeDir = System.getProperty("user.home")+install4jHomeDir
- }
- } else if (OperatingSystem.current().isLinux()) {
- install4jHomeDir = System.getProperty("user.home")+"/buildtools/install4j"
- }
- installDir = file(install4jHomeDir)
- mediaTypes = Arrays.asList(install4jMediaTypes.split(","))
- if (install4jFaster.equals("true")) {
- faster = true
- }
-}
-
-def install4jConf
-def macosJavaVMDir
-def macosJavaVMTgz
-def windowsJavaVMDir
-def windowsJavaVMTgz
-def install4jDir = "$jalviewDir/$install4jResourceDir"
-def install4jConfFile = "jalview-installers-java"+JAVA_VERSION+".install4j"
-install4jConf = "$install4jDir/$install4jConfFile"
-
-task copyInstall4jTemplate(type: Copy) {
- macosJavaVMDir = System.env.HOME+"/buildtools/jre/openjdk-java_vm/getdown/macos-jre"+JAVA_VERSION+"/jre"
- macosJavaVMTgz = System.env.HOME+"/buildtools/jre/openjdk-java_vm/install4j/tgz/macos-jre"+JAVA_VERSION+".tar.gz"
- windowsJavaVMDir = System.env.HOME+"/buildtools/jre/openjdk-java_vm/getdown/windows-jre"+JAVA_VERSION+"/jre"
- windowsJavaVMTgz = System.env.HOME+"/buildtools/jre/openjdk-java_vm/install4j/tgz/windows-jre"+JAVA_VERSION+".tar.gz"
- from (install4jDir) {
- include install4jTemplate
- rename (install4jTemplate, install4jConfFile)
- filter(ReplaceTokens, beginToken: '', endToken: '', tokens: ['9999999999': JAVA_VERSION])
- filter(ReplaceTokens, beginToken: '$$', endToken: '$$',
- tokens: [
- 'JAVA_VERSION': JAVA_VERSION,
- 'JAVA_INTEGER_VERSION': JAVA_INTEGER_VERSION,
- 'VERSION': JALVIEW_VERSION,
- 'MACOS_JAVA_VM_DIR': macosJavaVMDir,
- 'MACOS_JAVA_VM_TGZ': macosJavaVMTgz,
- 'WINDOWS_JAVA_VM_DIR': windowsJavaVMDir,
- 'WINDOWS_JAVA_VM_TGZ': windowsJavaVMTgz,
- 'INSTALL4JINFOPLISTFILEASSOCIATIONS': install4jInfoPlistFileAssociations,
- 'COPYRIGHT_MESSAGE': install4jCopyrightMessage,
- 'MACOS_BUNDLE_ID': install4jMacOSBundleId,
- 'GETDOWN_RESOURCE_DIR': getdown_resource_dir,
- 'GETDOWN_DIST_DIR': getdown_app_dir,
- 'GETDOWN_ALT_DIR': getdown_app_dir_alt,
- 'GETDOWN_INSTALL_DIR': getdown_install_dir
- ]
- )
- if (OSX_KEYPASS=="") {
- filter(ReplaceTokens, beginToken: 'codeSigning macEnabled="', endToken: '"', tokens: ['true':'codeSigning macEnabled="false"'])
- filter(ReplaceTokens, beginToken: 'runPostProcessor="true" ',endToken: 'Processor', tokens: ['post':'runPostProcessor="false" postProcessor'])
- }
- }
- into install4jDir
- outputs.files(install4jConf)
-
- doLast {
- // include file associations in installer
- def installerFileAssociationsXml = file("$install4jDir/$install4jInstallerFileAssociations").text
- ant.replaceregexp(
- byline: false,
- flags: "s",
- match: '<action name="EXTENSIONS_REPLACED_BY_GRADLE".*?</action>',
- replace: installerFileAssociationsXml,
- file: install4jConf
- )
- /*
- // include uninstaller applescript app files in dmg
- def installerDMGUninstallerXml = file("$install4jDir/$install4jDMGUninstallerAppFiles").text
- ant.replaceregexp(
- byline: false,
- flags: "s",
- match: '<file name="UNINSTALL_OLD_JALVIEW_APP_REPLACED_IN_GRADLE" file=.*?>',
- replace: installerDMGUninstallerXml,
- file: install4jConf
- )
- */
- }
-}
-
-task installers(type: com.install4j.gradle.Install4jTask) {
- group = "distribution"
- description = "Create the install4j installers"
- dependsOn getdown
- dependsOn copyInstall4jTemplate
- projectFile = file(install4jConf)
- println("Using projectFile "+projectFile)
- variables = [majorVersion: version.substring(2, 11), build: 001, OSX_KEYSTORE: OSX_KEYSTORE, JSIGN_SH: JSIGN_SH]
- destination = "$jalviewDir/$install4jBuildDir/$JAVA_VERSION"
- buildSelected = true
-
- if (OSX_KEYPASS) {
- macKeystorePassword=OSX_KEYPASS
-
- }
-
- inputs.dir(project.ext.getdownWebsiteDir)
- inputs.file(install4jConf)
- inputs.dir(macosJavaVMDir)
- inputs.dir(windowsJavaVMDir)
- outputs.dir("$jalviewDir/$install4jBuildDir/$JAVA_VERSION")
-
-}
-
-clean {
- delete install4jConf
-}
-
-task sourceDist (type: Tar) {
-
- def VERSION_UNDERSCORES = JALVIEW_VERSION.replaceAll("\\.", "_")
- def outputFileName = project.name + "_" + VERSION_UNDERSCORES + ".tar.gz"
- // cater for buildship < 3.1 [3.0.1 is max version in eclipse 2018-09]
- try {
- archiveFileName = outputFileName
- } catch (Exception e) {
- archiveName = outputFileName
- }
-
- compression Compression.GZIP
-
- into project.name
-
- def EXCLUDE_FILES=["build/*","bin/*","test-output/","test-reports","tests","clover*/*"
- ,".*"
- ,"benchmarking/*"
- ,"**/.*"
- ,"*.class"
- ,"**/*.class","$j11modDir/**/*.jar","appletlib","**/*locales"
- ,"*locales/**",
- ,"utils/InstallAnywhere"]
- def PROCESS_FILES=[ "AUTHORS",
- "CITATION",
- "FEATURETODO",
- "JAVA-11-README",
- "FEATURETODO",
- "LICENSE",
- "**/README",
- "RELEASE",
- "THIRDPARTYLIBS","TESTNG",
- "build.gradle",
- "gradle.properties",
- "**/*.java",
- "**/*.html",
- "**/*.xml",
- "**/*.gradle",
- "**/*.groovy",
- "**/*.properties",
- "**/*.perl",
- "**/*.sh"]
-
- from(jalviewDir) {
- exclude (EXCLUDE_FILES)
- include (PROCESS_FILES)
- filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['Version-Rel': JALVIEW_VERSION,'Year-Rel': getDate("yyyy")])
- }
- from(jalviewDir) {
- exclude (EXCLUDE_FILES)
- exclude (PROCESS_FILES)
- exclude ("appletlib")
- exclude ("**/*locales")
- exclude ("*locales/**")
- exclude ("utils/InstallAnywhere")
-
- exclude (getdown_files_dir)
- exclude (getdown_website_dir)
-
- // exluding these as not using jars as modules yet
- exclude ("$j11modDir/**/*.jar")
-}
-// from (jalviewDir) {
-// // explicit includes for stuff that seemed to not get included
-// include(fileTree("test/**/*."))
-// exclude(EXCLUDE_FILES)
-// exclude(PROCESS_FILES)
-// }
-}
-
-task helppages {
- dependsOn copyHelp
- dependsOn pubhtmlhelp
-
- inputs.dir("$classes/$helpDir")
- outputs.dir("$helpOutputDir")