- </target>
-
- <target name="packageApplet" depends="compileApplet, buildPropertiesFile">
- <copy file="${resourceDir}/images/idwidth.gif" toFile="${outputDir}/images/idwidth.gif"/>
- <copy file="${resourceDir}/images/link.gif" toFile="${outputDir}/images/link.gif"/>
- <jar destfile="in.jar">
- <manifest>
- <attribute name="Main-Class" value="jalview.bin.JalviewLite"/>
- </manifest>
- <fileset dir="${outputDir}">
- <include name="com/**"/>
- <include name="MCview/**"/>
- <include name="jalview/**"/>
- <include name=".build_properties"/>
- <include name="images/idwidth.gif"/>
- <include name="images/link.gif"/>
- </fileset>
- </jar>
- </target>
-
- <target name="obfuscate" depends="packageApplet">
- <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />
- <path id="jalviewlite.deps">
- <pathelement location="${java.home}/lib/rt.jar"/>
- <pathelement location="lib/jmol.jar"/>
- </path>
- <proguard>
- <libraryjar refid="jalviewlite.deps"/>
+ </target>
+
+ <target name="packageApplet" depends="compileApplet, buildPropertiesFile">
+ <copy file="${resourceDir}/images/idwidth.gif" toFile="${outputDir}/images/idwidth.gif"/>
+ <copy file="${resourceDir}/images/link.gif" toFile="${outputDir}/images/link.gif"/>
+ <jar destfile="in.jar">
+ <manifest>
+ <attribute name="Main-Class" value="jalview.bin.JalviewLite"/>
+ </manifest>
+ <fileset dir="${outputDir}">
+ <include name="com/**"/>
+ <include name="MCview/**"/>
+ <include name="jalview/**"/>
+ <include name=".build_properties"/>
+ <include name="images/idwidth.gif"/>
+ <include name="images/link.gif"/>
+ </fileset>
+ </jar>
+ </target>
+
+ <target name="obfuscate" depends="packageApplet">
+ <path id="obfuscateDeps.path">
+ <pathelement location="${java.home}/lib/rt.jar"/>
+ <pathelement location="lib/${jmolJar}"/>
+ </path>
+ <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />
+ <proguard>
+ <injar file="in.jar"/>
+ <outjar file="jalviewApplet.jar"/>
+ <libraryjar refid="obfuscateDeps.path"/>
+ <keep access="public" type="class"
+ name="jalview.bin.JalviewLite">
+ <field access="public"/>
+ <method access="public"/>
+ <constructor access="public"/>
+ </keep>
+<!-- -libraryjars "${obfuscateDeps}"