+ <!-- jalopy code reformatter -->
+ <target name="sourcescrub" depends="init,build">
+ <jalopy destdir="jsrc" classpathref="run.classpath"
+ convention="jalview-jalopy.xml">
+ <fileset dir="${sourceDir}">
+ <include name="*.java"/>
+ <include name="**/*.java"/>
+ <include name="**/**/*.java"/>
+ </fileset>
+ </jalopy>
+ </target>
+
+
+
+ <!-- Compile, package and obfuscate Jalview Applet -->
+ <target name="makeApplet" depends="obfuscate"/>
+
+ <target name="compileApplet" depends="init,clean">
+ <mkdir dir="${outputDir}"/>
+ <javac source="1.2" target="1.1" srcdir="${sourceDir}" destdir="${outputDir}"
+ includes="jalview/analysis/**,jalview/appletgui/**,jalview/datamodel/**jalview/jbappletgui/**,jalview/math/**,jalview/schemes/**"
+ excludes="ext/**,MCview/**,org/**,vamsas/**"/>
+ </target>
+
+ <target name="packageApplet" depends="compileApplet, buildPropertiesFile">
+ <copy file="${resourceDir}/images/idwidth.gif" toFile="${outputDir}/images/idwidth.gif"/>
+ <jar destfile="in.jar">
+ <fileset dir="${outputDir}">
+ <include name="com/**"/>
+ <include name="jalview/**"/>
+ <include name=".build_properties"/>
+ <include name="images/idwidth.gif"/>
+ </fileset>
+ </jar>
+ </target>
+
+ <target name="obfuscate" depends="packageApplet">
+ <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />
+ <proguard>
+ -libraryjars "${java.home}/lib/rt.jar"
+ -injars in.jar
+ -outjars jalviewApplet.jar
+ -keep public class jalview.bin.JalviewLite
+ </proguard>
+ <delete file="in.jar"/>
+ </target>
+
+