<mkdir dir="${outputDir}"/>
<javac source="1.2" target="1.1" srcdir="${sourceDir}" destdir="${outputDir}"
includes="jalview/analysis/**,jalview/appletgui/**,jalview/datamodel/**jalview/jbappletgui/**,jalview/math/**,jalview/schemes/**"
<mkdir dir="${outputDir}"/>
<javac source="1.2" target="1.1" srcdir="${sourceDir}" destdir="${outputDir}"
includes="jalview/analysis/**,jalview/appletgui/**,jalview/datamodel/**jalview/jbappletgui/**,jalview/math/**,jalview/schemes/**"