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JAL-4305 Isolate and unify the Jalview object from all the gubbins in jalview.bin...
[jalview.git]
/
examples
/
groovy
/
PIDmatrix.groovy
diff --git
a/examples/groovy/PIDmatrix.groovy
b/examples/groovy/PIDmatrix.groovy
index
b97abcc
..
76b9de7
100644
(file)
--- a/
examples/groovy/PIDmatrix.groovy
+++ b/
examples/groovy/PIDmatrix.groovy
@@
-56,7
+56,7
@@
printSimilarityMatrix(true,true,SimilarityParams.Jalview)
void printSimilarityMatrix(boolean selview=false, boolean includeids=true, SimilarityParams pidMethod) {
void printSimilarityMatrix(boolean selview=false, boolean includeids=true, SimilarityParams pidMethod) {
- def currentAlignFrame = jalview.bin.Jalview.getCurrentAlignFrame()
+ def currentAlignFrame = Jalview.getCurrentAlignFrame()
jalview.gui.AlignViewport av = currentAlignFrame.getCurrentView()
jalview.gui.AlignViewport av = currentAlignFrame.getCurrentView()
@@
-96,4
+96,4
@@
void printSimilarityMatrix(boolean selview=false, boolean includeids=true, Simil
print "\n"
}
print "\n"
}
-}
\ No newline at end of file
+}