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JAL-2629 fix for addHMMConsensus failing if no HMM sequences found
[jalview.git]
/
examples
/
groovy
/
printtitle.groovy
diff --git
a/examples/groovy/printtitle.groovy
b/examples/groovy/printtitle.groovy
index
eb56410
..
b3387ea
100644
(file)
--- a/
examples/groovy/printtitle.groovy
+++ b/
examples/groovy/printtitle.groovy
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-19,14
+19,17
@@
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
// do something groovy in jalview
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
// do something groovy in jalview
-print "Hello World.\n";
-def alf = Jalview.getAlignFrames();
+println "Hello World.\n"
+println "First sequence is " + currentAlFrame.viewport.alignment.getSequenceAt(0).getDisplayId(true)
+
+def alf = Jalview.getAlignFrames()
for (ala in alf)
{
// ala is an jalview.gui.AlignFrame object
for (ala in alf)
{
// ala is an jalview.gui.AlignFrame object
- print ala.getTitle()+"\n";
+ println ala.getTitle()
// get the parent jalview.datamodel.Alignment from the alignment viewport
// get the parent jalview.datamodel.Alignment from the alignment viewport
- def alignment = ala.viewport.alignment;
+ def alignment = ala.viewport.alignment
// get the first sequence from the jalview.datamodel.Alignment object
// get the first sequence from the jalview.datamodel.Alignment object
- def seq = alignment.getSequenceAt(0);
+ def seq = alignment.getSequenceAt(0)
}
}
+Jalview.quit()