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JAL-1665 getSequenceFeatures; Desktop.getAlignFrames camel-cased
[jalview.git]
/
examples
/
groovy
/
selectColumnsByFeatureAndGroup.groovy
diff --git
a/examples/groovy/selectColumnsByFeatureAndGroup.groovy
b/examples/groovy/selectColumnsByFeatureAndGroup.groovy
index
0a16391
..
ea2c596
100644
(file)
--- a/
examples/groovy/selectColumnsByFeatureAndGroup.groovy
+++ b/
examples/groovy/selectColumnsByFeatureAndGroup.groovy
@@
-11,7
+11,7
@@
def nal=0;
def nfeat=0;
def nseq=0;
def nfeat=0;
def nseq=0;
-for (ala in Jalview.getAlignframes()) {
+for (ala in Jalview.getAlignFrames()) {
def al = ala.viewport.alignment;
if (al!=null)
{
def al = ala.viewport.alignment;
if (al!=null)
{
@@
-21,7
+21,7
@@
for (ala in Jalview.getAlignframes()) {
{
def tfeat=0;
if (sq!=null) {
{
def tfeat=0;
if (sq!=null) {
- SequenceFeature[] sf = sq.getDatasetSequence().getSequenceFeatures();
+ SequenceFeature[] sf = sq.getSequenceFeatures();
for (sfpos in sf)
{
if (sfpos!=null && sfpos.getType().equals(toselect))
for (sfpos in sf)
{
if (sfpos!=null && sfpos.getType().equals(toselect))