git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-629 DON'T use quotation marks in argfiles as they are not interpreted (or needed)
[jalview.git]
/
examples
/
test_fab41.result
/
argfile.txt
diff --git
a/examples/test_fab41.result/argfile.txt
b/examples/test_fab41.result/argfile.txt
index
a3540cf
..
50e898e
100644
(file)
--- a/
examples/test_fab41.result/argfile.txt
+++ b/
examples/test_fab41.result/argfile.txt
@@
-1,16
+1,18
@@
+--debug
--nonews
--nosplash
--substitutions
--open={argfiledirname}/sample.a2m
--colour=gecos:flower
--structure={dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
--nonews
--nosplash
--substitutions
--open={argfiledirname}/sample.a2m
--colour=gecos:flower
--structure={dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
---paematrix="[label=PAE R1-M3]{dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json"
+--paematrix=[seqid=101;label=PAE R1-M3]{dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json
--structure={dirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
--structure={dirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
---paematrix="[label=PAE R2-M4]{dirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json"
+--paematrix=[label=PAE R2-M4]{dirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json
--structure={dirname}/test_fab41_unrelaxed_rank_3_model_2.pdb
--structure={dirname}/test_fab41_unrelaxed_rank_3_model_2.pdb
---paematrix="[label=PAE R3-M2]{dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json"
+--paematrix=[label=PAE R3-M2]{dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json
--structure={dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
--structure={dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
---paematrix="[label=PAE R4-M5]{dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json"
+--paematrix=[label=PAE R4-M5]{dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json
--structure={dirname}/test_fab41_unrelaxed_rank_5_model_1.pdb
--structure={dirname}/test_fab41_unrelaxed_rank_5_model_1.pdb
---paematrix="[label=PAE R5-M1]{dirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json"
+--paematrix=[label=PAE R5-M1]{dirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json
--image={dirname}/{basename}.html
--image={dirname}/{basename}.html
+#--headless