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[jalview.git]
/
forester
/
aptx
/
aptx_configuration_files
/
_aptx_configuration_file
diff --git
a/forester/aptx/aptx_configuration_files/_aptx_configuration_file
b/forester/aptx/aptx_configuration_files/_aptx_configuration_file
index
9fc8c84
..
a384a57
100644
(file)
--- a/
forester/aptx/aptx_configuration_files/_aptx_configuration_file
+++ b/
forester/aptx/aptx_configuration_files/_aptx_configuration_file
@@
-276,7
+276,7
@@
display_color: background 0x000000
display_color: background_gradient_bottom 0x0000FF
display_color: sequence 0xE6E6E6
display_color: taxonomy 0xB4B4B4
display_color: background_gradient_bottom 0x0000FF
display_color: sequence 0xE6E6E6
display_color: taxonomy 0xB4B4B4
-display_color: confidence 0x38B0FF
+display_color: confidence 0xB4B4B4
display_color: branch_length 0x8C8C8C
display_color: branch 0xFFFFFF
display_color: node_box 0xFFFFFF
display_color: branch_length 0x8C8C8C
display_color: branch 0xFFFFFF
display_color: node_box 0xFFFFFF
@@
-287,7
+287,8
@@
display_color: matching_a_and_b 0xFFFF00
display_color: duplication 0xFF0000
display_color: speciation 0x00FF00
display_color: duplication_or_specation 0xFFFF00
display_color: duplication 0xFF0000
display_color: speciation 0x00FF00
display_color: duplication_or_specation 0xFFFF00
-display_color: domains 0x7B68EE
+display_color: domain_label 0xE6E6E6
+display_color: domain_base 0x646464
display_color: binary_domain_combinations 0x4169FF
display_color: annotation 0xADFF2F
display_color: overview 0x828282
display_color: binary_domain_combinations 0x4169FF
display_color: annotation 0xADFF2F
display_color: overview 0x828282
@@
-319,13
+320,6
@@
vector_data_width: 120
vector_data_height: 12
vector_data_height: 12
-# Domain Structure Display Colors
-# -------------------------------
-domain_structure_base_color: 0x202020
-domain_structure_font_color: 0x909090
-
-
-
# Settings Specific for Archaeopteryx Applets (E and A)
# -----------------------------------------------------
# To automatically midpoint reroot trees upon loading: 'midpoint_reroot: yes'
# Settings Specific for Archaeopteryx Applets (E and A)
# -----------------------------------------------------
# To automatically midpoint reroot trees upon loading: 'midpoint_reroot: yes'