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[jalview.git]
/
forester
/
aptx
/
aptx_configuration_files
/
_aptx_configuration_file_1
diff --git
a/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1
b/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1
index
8b41305
..
a2ee8bf
100644
(file)
--- a/
forester/aptx/aptx_configuration_files/_aptx_configuration_file_1
+++ b/
forester/aptx/aptx_configuration_files/_aptx_configuration_file_1
@@
-125,7
+125,6
@@
font_family: Arial,Helvetica,Verdana,Tahoma,Dialog
font_size: 10
antialias_screen: yes
show_scale: yes
font_size: 10
antialias_screen: yes
show_scale: yes
-show_branch_length_values: no
cladogram_type: ext_node_sum_dep
phylogeny_graphics_type: rectangular
node_label_direction: horizontal
cladogram_type: ext_node_sum_dep
phylogeny_graphics_type: rectangular
node_label_direction: horizontal
@@
-144,6
+143,8
@@
overview_placement_type: upper_left
color_labels_same_as_branch_length_values: no
display_sequence_relations: no
show_domain_labels: yes
color_labels_same_as_branch_length_values: no
display_sequence_relations: no
show_domain_labels: yes
+line_up_renderable_data: no
+right_align_domain_architectures: no
branch_length_value_digits: 3
confidence_value_digits: 3
background_gradient: no
branch_length_value_digits: 3
confidence_value_digits: 3
background_gradient: no
@@
-199,10
+200,12
@@
show_taxonomy_common_names: nodisplay no
show_taxonomy_images: nodisplay no
show_annotations: nodisplay no
write_confidence_values: display ?
show_taxonomy_images: nodisplay no
show_annotations: nodisplay no
write_confidence_values: display ?
+write_branch_length_values: display no
write_events: nodisplay no
use_visual_styles: display no
width_branches: display no
show_domain_architectures: nodisplay no
write_events: nodisplay no
use_visual_styles: display no
width_branches: display no
show_domain_architectures: nodisplay no
+show_msa: nodisplay no
show_binary_characters: nodisplay no
show_binary_character_counts: nodisplay no
display_internal_data: display yes
show_binary_characters: nodisplay no
show_binary_character_counts: nodisplay no
display_internal_data: display yes
@@
-244,9
+247,9
@@
default_click_to: display_node_data
display_color: background 0x000000
display_color: background_gradient_bottom 0x0000FF
display_color: background 0x000000
display_color: background_gradient_bottom 0x0000FF
-display_color: sequence 0xDCDCDC
+display_color: sequence 0xE6E6E6
display_color: taxonomy 0xB4B4B4
display_color: taxonomy 0xB4B4B4
-display_color: confidence 0x38B0DE
+display_color: confidence 0xB4B4B4
display_color: branch_length 0x8C8C8C
display_color: branch 0xFFFFFF
display_color: node_box 0xFFFFFF
display_color: branch_length 0x8C8C8C
display_color: branch 0xFFFFFF
display_color: node_box 0xFFFFFF
@@
-257,7
+260,8
@@
display_color: matching_a_and_b 0xFFFF00
display_color: duplication 0xFF0000
display_color: speciation 0x00FF00
display_color: duplication_or_specation 0xFFFF00
display_color: duplication 0xFF0000
display_color: speciation 0x00FF00
display_color: duplication_or_specation 0xFFFF00
-display_color: domains 0x7B68EE
+display_color: domain_label 0xE6E6E6
+display_color: domain_base 0x646464
display_color: binary_domain_combinations 0x4169FF
display_color: annotation 0xADFF2F
display_color: overview 0x828282
display_color: binary_domain_combinations 0x4169FF
display_color: annotation 0xADFF2F
display_color: overview 0x828282