git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
in progress
[jalview.git]
/
forester
/
aptx
/
aptx_example_files
/
seq_colors_with_species_and_annotations.xml
diff --git
a/forester/aptx/aptx_example_files/seq_colors_with_species_and_annotations.xml
b/forester/aptx/aptx_example_files/seq_colors_with_species_and_annotations.xml
index
32ed2fe
..
079e5c0
100644
(file)
--- a/
forester/aptx/aptx_example_files/seq_colors_with_species_and_annotations.xml
+++ b/
forester/aptx/aptx_example_files/seq_colors_with_species_and_annotations.xml
@@
-20,7
+20,7
@@
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-alpha</name>
\r
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-alpha</name>
\r
- <annotation ref="subtree:A"></annotation>
\r
+ <annotation ref="subtree:one"></annotation>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
@@
-36,7
+36,7
@@
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-beta</name>
\r
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-beta</name>
\r
- <annotation ref="subtree:A"></annotation>
\r
+ <annotation ref="subtree:one"></annotation>
\r
</sequence>
\r
</clade>
\r
</clade>
\r
</sequence>
\r
</clade>
\r
</clade>
\r
@@
-55,7
+55,7
@@
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-beta</name>
\r
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-beta</name>
\r
- <annotation ref="subtree:A"></annotation>
\r
+ <annotation ref="subtree:one"></annotation>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
@@
-73,7
+73,7
@@
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-alpha</name>
\r
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-alpha</name>
\r
- <annotation ref="subtree:A"></annotation>
\r
+ <annotation ref="subtree:one"></annotation>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
@@
-89,7
+89,7
@@
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-alpha</name>
\r
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-alpha</name>
\r
- <annotation ref="subtree:A"></annotation>
\r
+ <annotation ref="subtree:one"></annotation>
\r
</sequence>
\r
</clade>
\r
</clade>
\r
</sequence>
\r
</clade>
\r
</clade>
\r
@@
-110,7
+110,7
@@
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-alpha</name>
\r
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-alpha</name>
\r
- <annotation ref="subtree:B"></annotation>
\r
+ <annotation ref="subtree:two"></annotation>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
@@
-128,7
+128,7
@@
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-alpha</name>
\r
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-alpha</name>
\r
- <annotation ref="subtree:B"></annotation>
\r
+ <annotation ref="subtree:two"></annotation>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
@@
-144,7
+144,7
@@
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-alpha</name>
\r
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-alpha</name>
\r
- <annotation ref="subtree:B"></annotation>
\r
+ <annotation ref="subtree:two"></annotation>
\r
</sequence>
\r
</clade>
\r
</clade>
\r
</sequence>
\r
</clade>
\r
</clade>
\r
@@
-166,7
+166,7
@@
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-alpha</name>
\r
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-alpha</name>
\r
- <annotation ref="subtree:B"></annotation>
\r
+ <annotation ref="subtree:two"></annotation>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
@@
-182,7
+182,7
@@
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-beta</name>
\r
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-beta</name>
\r
- <annotation ref="subtree:B"></annotation>
\r
+ <annotation ref="subtree:two"></annotation>
\r
</sequence>
\r
</clade>
\r
</clade>
\r
</sequence>
\r
</clade>
\r
</clade>
\r
@@
-201,7
+201,7
@@
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-beta</name>
\r
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-beta</name>
\r
- <annotation ref="subtree:B"></annotation>
\r
+ <annotation ref="subtree:two"></annotation>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
@@
-219,7
+219,7
@@
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-delta</name>
\r
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-delta</name>
\r
- <annotation ref="subtree:B"></annotation>
\r
+ <annotation ref="subtree:two"></annotation>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
</sequence>
\r
</clade>
\r
<clade>
\r
@@
-235,7
+235,7
@@
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-delta</name>
\r
</taxonomy>
\r
<sequence>
\r
<name>Tubulin-delta</name>
\r
- <annotation ref="subtree:B"></annotation>
\r
+ <annotation ref="subtree:two"></annotation>
\r
</sequence>
\r
</clade>
\r
</clade>
\r
</sequence>
\r
</clade>
\r
</clade>
\r