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Allow to retrieve a snapshot of the edited phylogenetic tree using javascript code...
[jalview.git]
/
forester
/
java
/
build.xml
diff --git
a/forester/java/build.xml
b/forester/java/build.xml
index
6213ab1
..
1492570
100644
(file)
--- a/
forester/java/build.xml
+++ b/
forester/java/build.xml
@@
-4,8
+4,8
@@
<property name="src.dir" value="src" />
<property name="classes.dir" value="classes" />
<property name="jars.dir" value="resources" />
<property name="src.dir" value="src" />
<property name="classes.dir" value="classes" />
<property name="jars.dir" value="resources" />
- <property name="itextjar" value="${jars.dir}/iText-2.1.7.jar" />
- <!--<property name="fluorite_jar" value="${jars.dir}/fluorite.jar"/>-->
+ <property name="itextjar" value="${jars.dir}/itextpdf-5.1.0.jar" />
+ <property name="commonscodecjar" value="${jars.dir}/commons-codec-1.5.jar" />
<property name="forester_jar" value="forester.jar" />
<property name="archaeopteryx_applets_jar" value="archaeopteryx_applets.jar" />
<property name="forester_jar" value="forester.jar" />
<property name="archaeopteryx_applets_jar" value="archaeopteryx_applets.jar" />
@@
-20,6
+20,9
@@
<copy verbose="true"
file="../resources/phyloxml_schema/1.10/phyloxml.xsd"
todir="${classes.dir}/resources"/>
<copy verbose="true"
file="../resources/phyloxml_schema/1.10/phyloxml.xsd"
todir="${classes.dir}/resources"/>
+ <copy verbose="true"
+ file="../resources/synth_laf/synth_look_and_feel_1.xml"
+ todir="${classes.dir}/resources"/>
</target>
<target name="compile" description="Compiles the Task" depends="clean">
</target>
<target name="compile" description="Compiles the Task" depends="clean">
@@
-31,7
+34,7
@@
<target name="compile_applets_only" description="Compiles the Task" depends="clean">
<mkdir dir="${classes.dir}" />
<target name="compile_applets_only" description="Compiles the Task" depends="clean">
<mkdir dir="${classes.dir}" />
- <javac source="1.5" target="1.5" debug="false" srcdir="${src.dir}" destdir="${classes.dir}" optimize="on" verbose="false" classpath="${itextjar}">
+ <javac source="1.5" target="1.5" debug="false" srcdir="${src.dir}" destdir="${classes.dir}" optimize="on" verbose="false" classpath="${itextjar};${commonscodecjar}">
<compilerarg value="-Xlint:deprecation" />
</javac>
</target>
<compilerarg value="-Xlint:deprecation" />
</javac>
</target>
@@
-45,12
+48,6
@@
<exclude name="**/*Test*.class" />
</patternset>
</unjar>
<exclude name="**/*Test*.class" />
</patternset>
</unjar>
- <!--<unjar src="${fluorite_jar}" dest="${classes.dir}">
- <patternset>
- <include name="**/*.class"/>
- <exclude name="**/*Test*.class"/>
- </patternset>
- </unjar>-->
<jar level="9" destfile="${forester_jar}" basedir="${classes.dir}" excludes="**/Test.class" duplicate="fail" index="true">
<manifest>
<attribute name="Main-Class" value="org.forester.archaeopteryx.Archaeopteryx" />
<jar level="9" destfile="${forester_jar}" basedir="${classes.dir}" excludes="**/Test.class" duplicate="fail" index="true">
<manifest>
<attribute name="Main-Class" value="org.forester.archaeopteryx.Archaeopteryx" />
@@
-59,8
+56,17
@@
</target>
<target name="jar_applets_only" description="JARs the classes files" depends="compile_applets_only,copy_resources">
</target>
<target name="jar_applets_only" description="JARs the classes files" depends="compile_applets_only,copy_resources">
+ <unjar src="${commonscodecjar}" dest="${classes.dir}">
+ <patternset>
+ <include name="**/*.class" />
+ <include name="**/*.afm" />
+ <include name="**/*.txt" />
+ <exclude name="**/*Test*.class" />
+ </patternset>
+ </unjar>
<jar level="9" destfile="${archaeopteryx_applets_jar}" basedir="${classes.dir}" excludes="org/forester/application/**
org/forester/development/**
<jar level="9" destfile="${archaeopteryx_applets_jar}" basedir="${classes.dir}" excludes="org/forester/application/**
org/forester/development/**
+ org/forester/evoinference/**
org/forester/go/**
org/forester/go/etc/**
org/forester/pccx/**
org/forester/go/**
org/forester/go/etc/**
org/forester/pccx/**