+ seqs_from_same_protein.add( seq );
+ }
+ doit( seqs_from_same_protein, out );
+ out.println( "" );
+ out.println( "" );
+ out.println( "Removed because same GN and region:" );
+ for( final String s : duplicate_gn_ra ) {
+ out.println( s );
+ }
+ out.println( "" );
+ out.println( "" );
+ out.println( "Removed because identical mol sequence:" );
+ for( final String s : duplicate_mol_seq ) {
+ out.println( s );
+ }
+ out.println( "" );
+ out.println( "" );
+ out.println( "Removed because too short:" );
+ for( final Sequence s : too_short ) {
+ out.println( s.toString() );