import org.forester.io.writers.SequenceWriter;
import org.forester.io.writers.SequenceWriter.SEQ_FORMAT;
import org.forester.sequence.BasicSequence;
import org.forester.io.writers.SequenceWriter;
import org.forester.io.writers.SequenceWriter.SEQ_FORMAT;
import org.forester.sequence.BasicSequence;
- private static boolean procSeq( final String infile, final Map<String, Short> names, final Sequence seq ) {
+ private static boolean procSeq( final String infile, final Map<String, Short> names, final MolecularSequence seq ) {
boolean duplicate = false;
final String name = seq.getIdentifier();
if ( !names.containsKey( name ) ) {
boolean duplicate = false;
final String name = seq.getIdentifier();
if ( !names.containsKey( name ) ) {