- final PhylogenyWriter writer = new PhylogenyWriter();
- writer.toPhyloXML( outtree, phy, 0 );
+ final PhylogenyWriter writer1 = new PhylogenyWriter();
+ writer1.toPhyloXML( outtree1, phy, 0 );
+ final PhylogenyNodeIterator it2 = phy.iteratorExternalForward();
+ while ( it2.hasNext() ) {
+ final PhylogenyNode node = it2.next();
+ processNode2( node, phy );
+ }
+ final PhylogenyWriter writer2 = new PhylogenyWriter();
+ writer2.toPhyloXML( outtree2, phy, 0 );