// ~/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester/java/forester.jar
// org.forester.application.decoratorX
// RRMa_ALL_plus_RRMa_ee3_50_hmmalign_05_40_fme_with_seqs_2.phylo.xml
// ~/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester/java/forester.jar
// org.forester.application.decoratorX
// RRMa_ALL_plus_RRMa_ee3_50_hmmalign_05_40_fme_with_seqs_2.phylo.xml
final PhyloXmlParser xml_parser = new PhyloXmlParser();
final Phylogeny phy = factory.create( intree, xml_parser )[ 0 ];
final BasicTable<String> t = BasicTableParser.parse( intable, '\t' );
final PhyloXmlParser xml_parser = new PhyloXmlParser();
final Phylogeny phy = factory.create( intree, xml_parser )[ 0 ];
final BasicTable<String> t = BasicTableParser.parse( intable, '\t' );