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[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
application
/
msa_compactor.java
diff --git
a/forester/java/src/org/forester/application/msa_compactor.java
b/forester/java/src/org/forester/application/msa_compactor.java
index
5d83681
..
9ed5e20
100644
(file)
--- a/
forester/java/src/org/forester/application/msa_compactor.java
+++ b/
forester/java/src/org/forester/application/msa_compactor.java
@@
-9,6
+9,7
@@
import java.util.List;
import org.forester.io.parsers.FastaParser;
import org.forester.io.parsers.GeneralMsaParser;
import org.forester.msa.Msa;
import org.forester.io.parsers.FastaParser;
import org.forester.io.parsers.GeneralMsaParser;
import org.forester.msa.Msa;
+import org.forester.msa.Msa.MSA_FORMAT;
import org.forester.msa.MsaCompactor;
import org.forester.msa.MsaMethods;
import org.forester.util.CommandLineArguments;
import org.forester.msa.MsaCompactor;
import org.forester.msa.MsaMethods;
import org.forester.util.CommandLineArguments;
@@
-99,6
+100,7
@@
public class msa_compactor {
for( final String id : mc.getRemovedSeqIds() ) {
System.out.println( id );
}
for( final String id : mc.getRemovedSeqIds() ) {
System.out.println( id );
}
+ mc.writeMsa( out, MSA_FORMAT.PHYLIP, ".aln" );
}
catch ( final Exception e ) {
e.printStackTrace();
}
catch ( final Exception e ) {
e.printStackTrace();