- System.out.println( " MSA length : " + msa.getLength() );
- System.out.println( " Number of sequences : " + msa.getNumberOfSequences() );
- System.out.println( " Median sequence length : " + NF_1.format( initial_msa_stats.median() ) );
- System.out.println( " Mean sequence length : "
- + NF_1.format( initial_msa_stats.arithmeticMean() ) );
- System.out.println( " Max sequence length : " + ( ( int ) initial_msa_stats.getMax() ) );
- System.out.println( " Min sequence length : " + ( ( int ) initial_msa_stats.getMin() ) );
- System.out.println( " Gap ratio : "
+ printMsaInfo( msa, initial_msa_stats );
+ }
+
+ private static void printMsaInfo( DeleteableMsa msa, final DescriptiveStatistics msa_stats ) {
+ System.out.println( "MSA length : " + msa.getLength() );
+ System.out.println( "Number of sequences : " + msa.getNumberOfSequences() );
+ System.out.println( "Median sequence length : " + NF_1.format( msa_stats.median() ) );
+ System.out.println( "Mean sequence length : "
+ + NF_1.format( msa_stats.arithmeticMean() ) );
+ System.out.println( "Max sequence length : " + ( ( int ) msa_stats.getMax() ) );
+ System.out.println( "Min sequence length : " + ( ( int ) msa_stats.getMin() ) );
+ System.out.println( "Gap ratio : "