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added -rs option
[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
application
/
obo_tool.java
diff --git
a/forester/java/src/org/forester/application/obo_tool.java
b/forester/java/src/org/forester/application/obo_tool.java
index
17281b7
..
0afbabe
100644
(file)
--- a/
forester/java/src/org/forester/application/obo_tool.java
+++ b/
forester/java/src/org/forester/application/obo_tool.java
@@
-21,7
+21,7
@@
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.application;
package org.forester.application;
@@
-98,7
+98,7
@@
public class obo_tool {
ForesterUtil.fatalError( PRG_NAME, e.toString() );
}
ForesterUtil.programMessage( PRG_NAME, "successfully read in " + go_terms.size() + " GO terms from [" + infile
ForesterUtil.fatalError( PRG_NAME, e.toString() );
}
ForesterUtil.programMessage( PRG_NAME, "successfully read in " + go_terms.size() + " GO terms from [" + infile
- + "]" );
+ + "]" );
if ( output_ids_to_names ) {
final File outfile_ids_to_names = new File( outfile + IDS_TO_NAMES_SUFFIX );
final String error = ForesterUtil.isWritableFile( outfile_ids_to_names );
if ( output_ids_to_names ) {
final File outfile_ids_to_names = new File( outfile + IDS_TO_NAMES_SUFFIX );
final String error = ForesterUtil.isWritableFile( outfile_ids_to_names );