System.out.println( " -o=<file> : write output to <file>" );
System.out.println( " -i=<file> : read (new-line separated) external node names from <file>" );
System.out.println( " -" + pccx.OUTPUT_ANNOTATED_PHYLOGENIES_OPTION
System.out.println( " -o=<file> : write output to <file>" );
System.out.println( " -i=<file> : read (new-line separated) external node names from <file>" );
System.out.println( " -" + pccx.OUTPUT_ANNOTATED_PHYLOGENIES_OPTION