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[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
application
/
pfam2go_extractor.java
diff --git
a/forester/java/src/org/forester/application/pfam2go_extractor.java
b/forester/java/src/org/forester/application/pfam2go_extractor.java
index
d9f4cd3
..
6852d05
100644
(file)
--- a/
forester/java/src/org/forester/application/pfam2go_extractor.java
+++ b/
forester/java/src/org/forester/application/pfam2go_extractor.java
@@
-39,7
+39,6
@@
import org.forester.go.GoUtils;
import org.forester.go.OBOparser;
import org.forester.go.PfamToGoMapping;
import org.forester.go.PfamToGoParser;
import org.forester.go.OBOparser;
import org.forester.go.PfamToGoMapping;
import org.forester.go.PfamToGoParser;
-import org.forester.protein.DomainId;
public class pfam2go_extractor {
public class pfam2go_extractor {
@@
-79,7
+78,7
@@
public class pfam2go_extractor {
}
final SortedSet<String> pfams = new TreeSet<String>();
for( final PfamToGoMapping pfam_to_go_mapping : pfam2go ) {
}
final SortedSet<String> pfams = new TreeSet<String>();
for( final PfamToGoMapping pfam_to_go_mapping : pfam2go ) {
- final DomainId domain_id = pfam_to_go_mapping.getKey();
+ final String domain_id = pfam_to_go_mapping.getKey();
final GoId go_id = pfam_to_go_mapping.getValue();
final Set<GoId> supers = GoUtils.getAllSuperGoIds( go_id, goid_to_term_map );
supers.add( go_id );
final GoId go_id = pfam_to_go_mapping.getValue();
final Set<GoId> supers = GoUtils.getAllSuperGoIds( go_id, goid_to_term_map );
supers.add( go_id );