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removed clustalo
[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
application
/
pfam2go_extractor.java
diff --git
a/forester/java/src/org/forester/application/pfam2go_extractor.java
b/forester/java/src/org/forester/application/pfam2go_extractor.java
index
63b4320
..
d9f4cd3
100644
(file)
--- a/
forester/java/src/org/forester/application/pfam2go_extractor.java
+++ b/
forester/java/src/org/forester/application/pfam2go_extractor.java
@@
-21,7
+21,7
@@
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.application;
package org.forester.application;
@@
-83,8
+83,8
@@
public class pfam2go_extractor {
final GoId go_id = pfam_to_go_mapping.getValue();
final Set<GoId> supers = GoUtils.getAllSuperGoIds( go_id, goid_to_term_map );
supers.add( go_id );
final GoId go_id = pfam_to_go_mapping.getValue();
final Set<GoId> supers = GoUtils.getAllSuperGoIds( go_id, goid_to_term_map );
supers.add( go_id );
- for( int i = 0; i < queries.length; ++i ) {
- if ( supers.contains( queries[ i ] ) ) {
+ for( final GoId querie : queries ) {
+ if ( supers.contains( querie ) ) {
pfams.add( domain_id.toString() );
}
}
pfams.add( domain_id.toString() );
}
}