- System.out.println( " " + FIELD_CLADE_NAME + ": transfer name to node/clade name" );
- System.out.println( " " + FIELD_TAXONOMY_CODE + ": transfer name to taxonomy code" );
- System.out.println( " " + FIELD_TAXONOMY_SCI_NAME + ": transfer name to taxonomy scientific name" );
- System.out.println( " " + FIELD_TAXONOMY_COMM_NAME + ": transfer name to taxonomy common name" );
- System.out.println( " " + FIELD_SEQUENCE_GENE_NAME + ": transfer name to sequence name" );
- System.out.println( " " + FIELD_SEQUENCE_SYMBOL + ": transfer name to sequence symbol" );
- System.out
- .println( " "
- + FIELD_UNIPROT_TAXONOMY_ID_SPLIT_1
- + ": transfer/split name to taxonomy uniprot identifier\n (split at underscore if \"id_name\" pattern, e.g. \"817_SusD\")" );
- System.out
- .println( " "
- + FIELD_UNIPROT_TAXONOMY_ID_SPLIT_2
- + ": transfer/split name to taxonomy uniprot identifier\n (split at underscore if \"name_id\" pattern, e.g. \"SusD_817\")" );
+ System.out.println( " " + FIELD_CLADE_NAME + ": transfer name to node/clade name" );
+ System.out.println( " " + FIELD_TAXONOMY_CODE + ": transfer name to taxonomy code" );
+ System.out.println( " " + FIELD_TAXONOMY_SCI_NAME + ": transfer name to taxonomy scientific name" );
+ System.out.println( " " + FIELD_TAXONOMY_COMM_NAME + ": transfer name to taxonomy common name" );
+ System.out.println( " " + FIELD_SEQUENCE_GENE_NAME + ": transfer name to sequence name" );
+ System.out.println( " " + FIELD_SEQUENCE_SYMBOL + ": transfer name to sequence symbol" );
+ System.out.println( " " + FIELD_DUMMY + ": to convert NHX formatted trees to phyloXML" );
+ System.out.println( " " + FIELD_UNIPROT_TAXONOMY_ID_SPLIT_1
+ + ": transfer/split name to taxonomy uniprot identifier" );
+ System.out.println( " (split at underscore if \"id_name\" pattern, e.g. \"817_SusD\")" );
+ System.out.println( " " + FIELD_UNIPROT_TAXONOMY_ID_SPLIT_2
+ + ": transfer/split name to taxonomy uniprot identifier" );
+ System.out.println( " (split at underscore if \"name_id\" pattern, e.g. \"SusD_817\")" );