if ( order_subtrees ) {
for( final Phylogeny phy : phys ) {
PhylogenyMethods.orderAppearance( phy.getRoot(), true, true, DESCENDANT_SORT_PRIORITY.TAXONOMY );
if ( order_subtrees ) {
for( final Phylogeny phy : phys ) {
PhylogenyMethods.orderAppearance( phy.getRoot(), true, true, DESCENDANT_SORT_PRIORITY.TAXONOMY );