- SurfacingUtil.writeMatrixToFile( new File( matrix_output_file + "_"
- + ForesterUtil.round( jacknife_ratio, 2 ) + "_" + jacknife_resamplings
- + surfacing.MATRIX_SHARED_BIN_COMBINATIONS_BASED_GENOME_DISTANCE_SUFFIX ), pwgc
- .getSharedBinaryCombinationsBasedDistances() );
- SurfacingUtil.writeMatrixToFile( new File( matrix_output_file + "_"
- + ForesterUtil.round( jacknife_ratio, 2 ) + "_" + jacknife_resamplings
- + surfacing.MATRIX_SHARED_DOMAINS_BASED_GENOME_DISTANCE_SUFFIX ), pwgc
- .getSharedDomainsBasedDistances() );
+ SurfacingUtil
+ .writeMatrixToFile( new File( matrix_output_file
+ + "_"
+ + ForesterUtil.round( jacknife_ratio, 2 )
+ + "_"
+ + jacknife_resamplings
+ + surfacing.MATRIX_SHARED_BIN_COMBINATIONS_BASED_GENOME_DISTANCE_SUFFIX ),
+ pwgc.getSharedBinaryCombinationsBasedDistances() );
+ SurfacingUtil
+ .writeMatrixToFile( new File( matrix_output_file + "_" + ForesterUtil.round( jacknife_ratio, 2 )
+ + "_" + jacknife_resamplings
+ + surfacing.MATRIX_SHARED_DOMAINS_BASED_GENOME_DISTANCE_SUFFIX ),
+ pwgc.getSharedDomainsBasedDistances() );