+ boolean output_binary_domain_combinationsfor_counts = false;
+ if ( cla.isOptionSet( DOMAIN_COMBINITONS_COUNTS_OUTPUT_OPTION ) ) {
+ output_binary_domain_combinationsfor_counts = true;
+ }
+ if ( cla.isOptionSet( surfacing.MAX_FS_E_VALUE_OPTION ) ) {
+ try {
+ fs_e_value_max = cla.getOptionValueAsDouble( surfacing.MAX_FS_E_VALUE_OPTION );
+ }
+ catch ( final Exception e ) {
+ ForesterUtil.fatalError( surfacing.PRG_NAME, "no acceptable value for E-value maximum" );
+ }
+ }
+ if ( cla.isOptionSet( surfacing.MAX_I_E_VALUE_OPTION ) ) {