- conf = new Configuration( null, false, false );
+ conf = new Configuration( null, false, false, true );
- conf = new Configuration( config_filename, false, false );
+ conf = new Configuration( config_filename, false, false, true );
if ( args.length > filename_index ) {
f = new File( args[ filename_index ] );
final String err = ForesterUtil.isReadableFile( f );
if ( args.length > filename_index ) {
f = new File( args[ filename_index ] );
final String err = ForesterUtil.isReadableFile( f );
- MainFrameApplication.createInstance( phylogenies, conf, title );
+ MainFrameApplication.createInstance( phylogenies, conf, title, current_dir );