- if ( !ForesterUtil.isEmpty( getSpeciesTreeUrlStr() ) ) {
- final URL species_tree_url = new URL( getSpeciesTreeUrlStr() );
- final Phylogeny[] species_trees = AptxUtil
- .readPhylogeniesFromUrl( species_tree_url,
- configuration.isValidatePhyloXmlAgainstSchema(),
- configuration.isReplaceUnderscoresInNhParsing(),
- false,
- TAXONOMY_EXTRACTION.NO );
- if ( ( species_trees != null ) && ( species_trees.length > 0 ) ) {
- AptxUtil.printAppletMessage( NAME, "successfully read species tree" );
- getMainFrameApplet().setSpeciesTree( species_trees[ 0 ] );
- }
- }