+ public static enum NODE_LABEL_DIRECTION {
+ HORIZONTAL, RADIAL;
+ }
+
+ public static enum PHYLOGENY_GRAPHICS_TYPE {
+ CIRCULAR, CONVEX, CURVED, EURO_STYLE, RECTANGULAR, ROUNDED, TRIANGULAR, UNROOTED;
+ }
+
+ static enum OVERVIEW_PLACEMENT_TYPE {
+ LOWER_LEFT( "lower left" ),
+ LOWER_RIGHT( "lower right" ),
+ UPPER_LEFT( "upper left" ),
+ UPPER_RIGHT( "upper right" );
+
+ private final String _name;
+
+ private OVERVIEW_PLACEMENT_TYPE( final String name ) {
+ _name = name;
+ }
+
+ @Override
+ public String toString() {
+ return _name;
+ }
+
+ public String toTag() {
+ return toString().replaceAll( " ", "_" );
+ }
+ }
+ static final double MIN_CONFIDENCE_DEFAULT = 0.0;
+ private boolean _abbreviate_scientific_names;
+ private boolean _allow_errors_in_distance_to_parent;
+ private boolean _antialias_print;
+ private boolean _antialias_screen;
+ private boolean _background_color_gradient;
+ private Font _base_font;
+ private CLADOGRAM_TYPE _cladogram_type;
+ private boolean _color_by_taxonomic_group;
+ private boolean _color_labels_same_as_parent_branch;
+ private NodeVisualData.NodeFill _default_node_fill;
+ private NodeVisualData.NodeShape _default_node_shape;
+ private short _default_node_shape_size;
+ private boolean _editable;
+ private NodeDataField _ext_desc_data_to_return;
+ private final boolean _graphics_export_using_actual_size = true;
+ private boolean _graphics_export_visible_only;
+ private boolean _internal_number_are_confidence_for_nh_parsing;
+ private boolean _inverse_search_result;
+ private boolean _match_whole_terms_only;
+ private boolean _search_with_regex;
+ private double _min_confidence_value;
+ private NH_CONVERSION_SUPPORT_VALUE_STYLE _nh_conversion_support_value_style;
+ private boolean _nh_parsing_replace_underscores;
+ private NODE_LABEL_DIRECTION _node_label_direction;
+ private short _number_of_digits_after_comma_for_branch_length_values;
+ private short _number_of_digits_after_comma_for_confidence_values;
+ private OVERVIEW_PLACEMENT_TYPE _ov_placement;
+ private PHYLOGENY_GRAPHICS_TYPE _phylogeny_graphics_type;
+ private boolean _print_black_and_white;
+ private float _print_line_width;
+ private final boolean _print_using_actual_size = true;
+ private double _scale_bar_length;
+ private boolean _search_case_sensitive;
+ private boolean _show_annotation_ref_source;
+ private boolean _show_confidence_stddev;
+ private boolean _show_default_node_shapes_for_marked_nodes;
+ private boolean _show_default_node_shapes_external;
+ private boolean _show_default_node_shapes_internal;
+ private boolean _show_domain_labels;
+ private boolean _show_overview;
+ private boolean _show_scale;
+ private TAXONOMY_EXTRACTION _taxonomy_extraction;
+ private boolean _line_up_renderable_node_data;
+ private boolean _right_align_domains;
+ private boolean _color_all_found_nodes_when_coloring_subtree;
+ private boolean _parse_beast_style_extended_nexus_tags;
+