- private Msa runClustalOmega( final List<Sequence> seqs, final List<String> opts ) throws IOException,
- InterruptedException {
- Msa msa = null;
- final MsaInferrer clustalo = ClustalOmega.createInstance( _mf.getInferenceManager().getPathToLocalClustalo()
- .getCanonicalPath() );
- try {
- msa = clustalo.infer( seqs, opts );
- }
- catch ( final IOException e ) {
- System.out.println( clustalo.getErrorDescription() );
- }
- return msa;
- }
-