git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
in progress
[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
development
/
DevelopmentTools.java
diff --git
a/forester/java/src/org/forester/development/DevelopmentTools.java
b/forester/java/src/org/forester/development/DevelopmentTools.java
index
9cb5e77
..
3cbc385
100644
(file)
--- a/
forester/java/src/org/forester/development/DevelopmentTools.java
+++ b/
forester/java/src/org/forester/development/DevelopmentTools.java
@@
-21,12
+21,13
@@
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.development;
import java.util.Random;
package org.forester.development;
import java.util.Random;
+import org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException;
import org.forester.phylogeny.Phylogeny;
import org.forester.phylogeny.PhylogenyMethods;
import org.forester.phylogeny.PhylogenyNode;
import org.forester.phylogeny.Phylogeny;
import org.forester.phylogeny.PhylogenyMethods;
import org.forester.phylogeny.PhylogenyNode;
@@
-133,7
+134,12
@@
public final class DevelopmentTools {
PhylogenyNode n = t.getFirstExternalNode();
int j = t.getRoot().getNumberOfExternalNodes();
while ( n != null ) {
PhylogenyNode n = t.getFirstExternalNode();
int j = t.getRoot().getNumberOfExternalNodes();
while ( n != null ) {
- PhylogenyMethods.setTaxonomyCode( n, j + "" );
+ try {
+ PhylogenyMethods.setTaxonomyCode( n, j + "" );
+ }
+ catch ( final PhyloXmlDataFormatException e ) {
+ e.printStackTrace();
+ }
j--;
n = n.getNextExternalNode();
}
j--;
n = n.getNextExternalNode();
}
@@
-176,8
+182,13
@@
public final class DevelopmentTools {
final Random r = new Random();
PhylogenyNode n = t.getFirstExternalNode();
while ( n != null ) {
final Random r = new Random();
PhylogenyNode n = t.getFirstExternalNode();
while ( n != null ) {
- final String code = ( ( Math.abs( r.nextInt() ) % ( ma - mi + 1 ) ) + mi ) + "";
- PhylogenyMethods.setTaxonomyCode( n, code );
+ final String code = ( ( Math.abs( r.nextInt() ) % ( ( ma - mi ) + 1 ) ) + mi ) + "";
+ try {
+ PhylogenyMethods.setTaxonomyCode( n, code );
+ }
+ catch ( final PhyloXmlDataFormatException e ) {
+ e.printStackTrace();
+ }
n = n.getNextExternalNode();
}
}
n = n.getNextExternalNode();
}
}