// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
import org.forester.phylogeny.Phylogeny;
import org.forester.phylogeny.PhylogenyMethods;
import org.forester.phylogeny.PhylogenyNode;
import org.forester.phylogeny.Phylogeny;
import org.forester.phylogeny.PhylogenyMethods;
import org.forester.phylogeny.PhylogenyNode;
* @return a newly created unbalanced Phylogeny
*/
// public static Phylogeny createUnbalancedTree( int i ) {
* @return a newly created unbalanced Phylogeny
*/
// public static Phylogeny createUnbalancedTree( int i ) {
// try {
// PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance();
// t1 = factory.create( ":S=", new SimpleNHXParser() );
// try {
// PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance();
// t1 = factory.create( ":S=", new SimpleNHXParser() );
/**
* Sets the species names of the external Nodes of Phylogeny t to a random
* positive integer number between (and including) min and max.
/**
* Sets the species names of the external Nodes of Phylogeny t to a random
* positive integer number between (and including) min and max.
- final String code = ( ( Math.abs( r.nextInt() ) % ( ma - mi + 1 ) ) + mi ) + "";
- PhylogenyMethods.setTaxonomyCode( n, code );
+ final String code = ( ( Math.abs( r.nextInt() ) % ( ( ma - mi ) + 1 ) ) + mi ) + "";
+ try {
+ PhylogenyMethods.setTaxonomyCode( n, code );
+ }
+ catch ( final PhyloXmlDataFormatException e ) {
+ e.printStackTrace();
+ }