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[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
go
/
BasicGoSubset.java
diff --git
a/forester/java/src/org/forester/go/BasicGoSubset.java
b/forester/java/src/org/forester/go/BasicGoSubset.java
index
dc63b52
..
f1658d7
100644
(file)
--- a/
forester/java/src/org/forester/go/BasicGoSubset.java
+++ b/
forester/java/src/org/forester/go/BasicGoSubset.java
@@
-21,7
+21,7
@@
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.go;
package org.forester.go;
@@
-46,6
+46,9
@@
public class BasicGoSubset implements GoSubset {
else if ( my_s.equals( GOSLIM_CANDIDA_STR ) ) {
_type = Type.GOSLIM_CANDIDA;
}
else if ( my_s.equals( GOSLIM_CANDIDA_STR ) ) {
_type = Type.GOSLIM_CANDIDA;
}
+ else if ( my_s.equals( GOSLIM_ASPERGILLUS_STR ) ) {
+ _type = Type.GOSLIM_ASPERGILLUS;
+ }
else if ( my_s.equals( GOSLIM_PLANT_STR ) ) {
_type = Type.GOSLIM_PLANT;
}
else if ( my_s.equals( GOSLIM_PLANT_STR ) ) {
_type = Type.GOSLIM_PLANT;
}
@@
-61,6
+64,9
@@
public class BasicGoSubset implements GoSubset {
else if ( my_s.equals( UNVETTED_STR ) ) {
_type = Type.UNVETTED;
}
else if ( my_s.equals( UNVETTED_STR ) ) {
_type = Type.UNVETTED;
}
+ else if ( my_s.equals( MF_NEEDS_REVIEW_STR ) ) {
+ _type = Type.MF_NEEDS_REVIEW;
+ }
else {
throw new IllegalArgumentException( "unknown GO subset type: " + my_s );
}
else {
throw new IllegalArgumentException( "unknown GO subset type: " + my_s );
}
@@
-116,6
+122,9
@@
public class BasicGoSubset implements GoSubset {
case GOSLIM_PLANT:
sb.append( GOSLIM_PLANT_STR );
break;
case GOSLIM_PLANT:
sb.append( GOSLIM_PLANT_STR );
break;
+ case GOSLIM_ASPERGILLUS:
+ sb.append( GOSLIM_ASPERGILLUS_STR );
+ break;
case GOSLIM_YEAST:
sb.append( GOSLIM_YEAST_STR );
break;
case GOSLIM_YEAST:
sb.append( GOSLIM_YEAST_STR );
break;
@@
-125,6
+134,15
@@
public class BasicGoSubset implements GoSubset {
case GOSLIM_POMBE:
sb.append( GOSLIM_POMBE_STR );
break;
case GOSLIM_POMBE:
sb.append( GOSLIM_POMBE_STR );
break;
+ case MF_NEEDS_REVIEW:
+ sb.append( MF_NEEDS_REVIEW_STR );
+ break;
+ case HIGH_LEVEL_ANNOTATION_QC:
+ sb.append( HIGH_LEVEL_ANNOTATION_QC_STR );
+ break;
+ case UNVETTED:
+ sb.append( UNVETTED_STR );
+ break;
default:
new AssertionError( "unknown type: " + getType() );
}
default:
new AssertionError( "unknown type: " + getType() );
}