+ final Matcher m_ss = TAXOMONY_SN_PATTERN_STRAIN_SUBSTRAIN.matcher( name );
+ if ( m_ss.find() ) {
+ String s = m_ss.group( 1 ).replace( '_', ' ' );
+ if ( s.indexOf( " str " ) > 4 ) {
+ s = s.replaceFirst( " str ", " str. " );
+ }
+ if ( s.indexOf( " substr " ) > 4 ) {
+ s = s.replaceFirst( " substr ", " substr. " );
+ }
+ return s;
+ }
+ final Matcher m_str1 = TAXOMONY_SN_PATTERN_STRAIN_1.matcher( name );
+ if ( m_str1.find() ) {
+ String s = m_str1.group( 1 ).replace( '_', ' ' );
+ if ( s.indexOf( " str " ) > 4 ) {
+ s = s.replaceFirst( " str ", " str. " );
+ }
+ else if ( s.indexOf( " subsp " ) > 4 ) {
+ s = s.replaceFirst( " subsp ", " subsp. " );
+ }
+ else if ( s.indexOf( " ssp " ) > 4 ) {
+ s = s.replaceFirst( " ssp ", " subsp. " );
+ }
+ else if ( s.indexOf( " ssp. " ) > 4 ) {
+ s = s.replaceFirst( " ssp. ", " subsp. " );
+ }
+ else if ( s.indexOf( " var " ) > 4 ) {
+ s = s.replaceFirst( " var ", " var. " );
+ }
+ return s;
+ }
+ final Matcher m_str2 = TAXOMONY_SN_PATTERN_STRAIN_2.matcher( name );
+ if ( m_str2.find() ) {
+ String s = m_str2.group( 1 ).replace( '_', ' ' );
+ if ( s.indexOf( " (str " ) > 4 ) {
+ s = s.replaceFirst( " \\(str ", " (str. " );
+ }
+ else if ( s.indexOf( " (subsp " ) > 4 ) {
+ s = s.replaceFirst( " \\(subsp ", " (subsp. " );
+ }
+ else if ( s.indexOf( " (ssp " ) > 4 ) {
+ s = s.replaceFirst( " \\(ssp ", " (subsp. " );
+ }
+ else if ( s.indexOf( " (ssp. " ) > 4 ) {
+ s = s.replaceFirst( " \\(ssp. ", " (subsp. " );
+ }
+ else if ( s.indexOf( " (var " ) > 4 ) {
+ s = s.replaceFirst( " \\(var ", " (var. " );
+ }
+ return s;
+ }
+ final Matcher m_sns = TAXOMONY_SN_PATTERN_SNS.matcher( name );
+ if ( m_sns.find() ) {
+ return m_sns.group( 1 ).replace( '_', ' ' );
+ }
+ final Matcher m_sns2 = TAXOMONY_SN_PATTERN_SNS2.matcher( name );
+ if ( m_sns2.find() ) {
+ return m_sns2.group( 1 ).replace( '_', ' ' );
+ }
+ final Matcher m_sn = TAXOMONY_SN_PATTERN_SN.matcher( name );
+ if ( m_sn.find() ) {
+ return m_sn.group( 1 ).replace( '_', ' ' );
+ }
+ final Matcher m_sp = TAXOMONY_SN_PATTERN_SP.matcher( name );
+ if ( m_sp.find() ) {
+ String s = m_sp.group( 1 ).replace( '_', ' ' );
+ if ( s.endsWith( " sp" ) ) {
+ s = s + ".";
+ }
+ return s;