// Copyright (C) 2000-2009 Christian M. Zmasek
// Copyright (C) 2007-2009 Burnham Institute for Medical Research
// All rights reserved
// Copyright (C) 2000-2009 Christian M. Zmasek
// Copyright (C) 2007-2009 Burnham Institute for Medical Research
// All rights reserved
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
public static void toPhyloXml( final Writer w, final PhylogenyNode node, final int level, final String indentation )
throws IOException {
String ind = "";
public static void toPhyloXml( final Writer w, final PhylogenyNode node, final int level, final String indentation )
throws IOException {
String ind = "";
ind = indentation + PhylogenyWriter.PHYLO_XML_INTENDATION_BASE;
}
if ( !ForesterUtil.isEmpty( node.getName() ) ) {
PhylogenyDataUtil.appendElement( w, PhyloXmlMapping.NODE_NAME, node.getName(), indentation );
}
ind = indentation + PhylogenyWriter.PHYLO_XML_INTENDATION_BASE;
}
if ( !ForesterUtil.isEmpty( node.getName() ) ) {
PhylogenyDataUtil.appendElement( w, PhyloXmlMapping.NODE_NAME, node.getName(), indentation );
}
PhylogenyDataUtil.appendElement( w, PhyloXmlMapping.BRANCH_LENGTH, String.valueOf( ForesterUtil.round( node
PhylogenyDataUtil.appendElement( w, PhyloXmlMapping.BRANCH_LENGTH, String.valueOf( ForesterUtil.round( node
- .getDistanceToParent(), PhyloXmlUtil.ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT ) ), indentation );
+ .getDistanceToParent(), PhyloXmlUtil.ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT ) ), indentation );
}
if ( node.getBranchData() != null ) {
node.getBranchData().toPhyloXML( w, level, ind );
}
if ( node.getBranchData() != null ) {
node.getBranchData().toPhyloXML( w, level, ind );