}
final StringBuilder stdout = command_executor.getStandardOutputFromCommand();
if ( ( stdout == null ) || ( stdout.length() < 2 ) ) {
throw new IOException( "Clustal Omega program did not produce any output\nCommand:\n" + my_opts
}
final StringBuilder stdout = command_executor.getStandardOutputFromCommand();
if ( ( stdout == null ) || ( stdout.length() < 2 ) ) {
throw new IOException( "Clustal Omega program did not produce any output\nCommand:\n" + my_opts