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cleanup
[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
msa
/
ClustalOmega.java
diff --git
a/forester/java/src/org/forester/msa/ClustalOmega.java
b/forester/java/src/org/forester/msa/ClustalOmega.java
index
f6d4f65
..
417e889
100644
(file)
--- a/
forester/java/src/org/forester/msa/ClustalOmega.java
+++ b/
forester/java/src/org/forester/msa/ClustalOmega.java
@@
-21,7
+21,7
@@
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.msa;
package org.forester.msa;
@@
-71,7
+71,7
@@
public final class ClustalOmega extends MsaInferrer {
return _exit_code;
}
return _exit_code;
}
-
+ @Override
public Msa infer( final List<Sequence> seqs, final List<String> opts ) throws IOException, InterruptedException {
final File file = File.createTempFile( "__clustalo_input_", ".fasta" );
file.deleteOnExit();
public Msa infer( final List<Sequence> seqs, final List<String> opts ) throws IOException, InterruptedException {
final File file = File.createTempFile( "__clustalo_input_", ".fasta" );
file.deleteOnExit();
@@
-82,8
+82,7
@@
public final class ClustalOmega extends MsaInferrer {
file.delete();
return msa;
}
file.delete();
return msa;
}
-
-
+
@Override
public Msa infer( final File path_to_input_seqs, final List<String> opts ) throws IOException, InterruptedException {
init();
@Override
public Msa infer( final File path_to_input_seqs, final List<String> opts ) throws IOException, InterruptedException {
init();
@@
-114,6
+113,4
@@
public final class ClustalOmega extends MsaInferrer {
_error = null;
_exit_code = -100;
}
_error = null;
_exit_code = -100;
}
-
-
}
}