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[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
msa
/
MsaCompactor.java
diff --git
a/forester/java/src/org/forester/msa/MsaCompactor.java
b/forester/java/src/org/forester/msa/MsaCompactor.java
index
469fa31
..
90b2ccc
100644
(file)
--- a/
forester/java/src/org/forester/msa/MsaCompactor.java
+++ b/
forester/java/src/org/forester/msa/MsaCompactor.java
@@
-140,12
+140,13
@@
public class MsaCompactor {
}
final private void write( final File outfile, final double gr ) throws IOException {
}
final private void write( final File outfile, final double gr ) throws IOException {
- writeMsa( outfile + "_" + _msa.getNumberOfSequences() + "_" + _msa.getLength() + "_" + gr + ".aln" );
+ writeMsa( outfile + "_" + _msa.getNumberOfSequences() + "_" + _msa.getLength() + "_"
+ + ForesterUtil.roundToInt( gr * 100 ) + ".aln" );
}
final private void writeMsa( final String outfile ) throws IOException {
final Writer w = ForesterUtil.createBufferedWriter( outfile );
}
final private void writeMsa( final String outfile ) throws IOException {
final Writer w = ForesterUtil.createBufferedWriter( outfile );
- _msa.write( w, MSA_FORMAT.PHYLIP );
+ _msa.write( w, MSA_FORMAT.FASTA );
w.close();
}
w.close();
}