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[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
msa
/
MsaInferrer.java
diff --git
a/forester/java/src/org/forester/msa/MsaInferrer.java
b/forester/java/src/org/forester/msa/MsaInferrer.java
index
55aa7f7
..
45fec85
100644
(file)
--- a/
forester/java/src/org/forester/msa/MsaInferrer.java
+++ b/
forester/java/src/org/forester/msa/MsaInferrer.java
@@
-29,7
+29,7
@@
import java.io.File;
import java.io.IOException;
import java.util.List;
import java.io.IOException;
import java.util.List;
-import org.forester.sequence.Sequence;
+import org.forester.sequence.MolecularSequence;
import org.forester.util.SystemCommandExecutor;
public abstract class MsaInferrer {
import org.forester.util.SystemCommandExecutor;
public abstract class MsaInferrer {
@@
-49,6
+49,6
@@
public abstract class MsaInferrer {
public abstract Msa infer( File path_to_input_seqs, List<String> opts ) throws IOException, InterruptedException;
public abstract Msa infer( File path_to_input_seqs, List<String> opts ) throws IOException, InterruptedException;
- public abstract Msa infer( final List<Sequence> seqs, final List<String> opts ) throws IOException,
- InterruptedException;
+ public abstract Msa infer( final List<MolecularSequence> seqs, final List<String> opts ) throws IOException,
+ InterruptedException;
}
}