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[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
msa
/
MsaMethods.java
diff --git
a/forester/java/src/org/forester/msa/MsaMethods.java
b/forester/java/src/org/forester/msa/MsaMethods.java
index
25330e0
..
1a94b74
100644
(file)
--- a/
forester/java/src/org/forester/msa/MsaMethods.java
+++ b/
forester/java/src/org/forester/msa/MsaMethods.java
@@
-168,9
+168,9
@@
public final class MsaMethods {
}
final public static DescriptiveStatistics calculateEffectiveLengthStatistics( final Msa msa ) {
}
final public static DescriptiveStatistics calculateEffectiveLengthStatistics( final Msa msa ) {
- DescriptiveStatistics stats = new BasicDescriptiveStatistics();
+ final DescriptiveStatistics stats = new BasicDescriptiveStatistics();
for( int row = 0; row < msa.getNumberOfSequences(); ++row ) {
for( int row = 0; row < msa.getNumberOfSequences(); ++row ) {
- Sequence s = msa.getSequence( row );
+ final Sequence s = msa.getSequence( row );
stats.addValue( s.getLength() - s.getNumberOfGapResidues() );
}
return stats;
stats.addValue( s.getLength() - s.getNumberOfGapResidues() );
}
return stats;