- model.addData( seqs_gaps, "Gap ratio" );
- model.setSeriesLine( "Series " + "Gap ratio", true );
- model.setSeriesMarker( "Series " + "Gap ratio", false );
+ model.addData( seqs_gaps, "Gap Ratio" + " (" + minMaxToString( min_gap_ratio, max_gap_ratio ) + ")" );
+ model.setSeriesLine( "Series " + "Gap Ratio", true );
+ model.setSeriesMarker( "Series " + "Gap Ratio", false );
+ final double[][] gap_counts = new double[ _msa_props.size() ][ 2 ];
+ for( int i = 0; i < _msa_props.size(); ++i ) {
+ gap_counts[ i ][ 0 ] = _initial_number_of_seqs - _msa_props.get( i ).getNumberOfSequences();
+ gap_counts[ i ][ 1 ] = ForesterUtil.roundToInt( _msa_props.get( i ).getAvgNumberOfGaps()
+ * avg_gaps_counts_factor );
+ }
+ model.addData( gap_counts, "Mean Gap Count" + " (" + minMaxToString( min_avg_gap_count, max_avg_gap_count )
+ + ")" );
+ model.setSeriesLine( "Series " + "Mean Gap Count", true );
+ model.setSeriesMarker( "Series " + "Mean Gap Count", false );