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0.9916 beta
[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
phylogeny
/
data
/
Event.java
diff --git
a/forester/java/src/org/forester/phylogeny/data/Event.java
b/forester/java/src/org/forester/phylogeny/data/Event.java
index
c362f7c
..
afccbcd
100644
(file)
--- a/
forester/java/src/org/forester/phylogeny/data/Event.java
+++ b/
forester/java/src/org/forester/phylogeny/data/Event.java
@@
-21,7
+21,7
@@
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.phylogeny.data;
package org.forester.phylogeny.data;
@@
-216,7
+216,7
@@
public class Event implements PhylogenyData {
/**
* Returns true if this event contains one or more duplications events only
/**
* Returns true if this event contains one or more duplications events only
- *
+ *
* @return true if this event contains one or more duplications events only
*/
public boolean isDuplication() {
* @return true if this event contains one or more duplications events only
*/
public boolean isDuplication() {
@@
-250,7
+250,7
@@
public class Event implements PhylogenyData {
/**
* Returns true if this event contains one or more gene loss events only
/**
* Returns true if this event contains one or more gene loss events only
- *
+ *
* @return true if this event contains one or more gene loss events only
*/
public boolean isGeneLoss() {
* @return true if this event contains one or more gene loss events only
*/
public boolean isGeneLoss() {
@@
-267,7
+267,7
@@
public class Event implements PhylogenyData {
/**
* Returns true if this event contains one or more speciation events only
/**
* Returns true if this event contains one or more speciation events only
- *
+ *
* @return true if this event contains one or more speciation events only
*/
public boolean isSpeciation() {
* @return true if this event contains one or more speciation events only
*/
public boolean isSpeciation() {
@@
-331,7
+331,7
@@
public class Event implements PhylogenyData {
PhylogenyDataUtil.appendOpen( writer, PhyloXmlMapping.EVENTS );
if ( ( getEventType() != EventType.unassigned ) && ( getEventType() != EventType.mixed ) ) {
PhylogenyDataUtil
PhylogenyDataUtil.appendOpen( writer, PhyloXmlMapping.EVENTS );
if ( ( getEventType() != EventType.unassigned ) && ( getEventType() != EventType.mixed ) ) {
PhylogenyDataUtil
- .appendElement( writer, PhyloXmlMapping.EVENT_TYPE, getEventType().toString(), indentation );
+ .appendElement( writer, PhyloXmlMapping.EVENT_TYPE, getEventType().toString(), indentation );
}
if ( getNumberOfDuplications() > 0 ) {
PhylogenyDataUtil.appendElement( writer,
}
if ( getNumberOfDuplications() > 0 ) {
PhylogenyDataUtil.appendElement( writer,