git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
more test for isDuplication() and isSpecation() added (phyloXML encoded
[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
protein
/
Domain.java
diff --git
a/forester/java/src/org/forester/protein/Domain.java
b/forester/java/src/org/forester/protein/Domain.java
index
c2a09b9
..
b1f720a
100644
(file)
--- a/
forester/java/src/org/forester/protein/Domain.java
+++ b/
forester/java/src/org/forester/protein/Domain.java
@@
-22,36
+22,24
@@
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.protein;
package org.forester.protein;
-import org.forester.go.GoId;
-
public interface Domain extends Comparable<Domain> {
public interface Domain extends Comparable<Domain> {
- public void addGoId( GoId go_id );
-
- public DomainId getDomainId();
+ public String getDomainId();
public int getLength();
public int getFrom();
public int getLength();
public int getFrom();
- public GoId getGoId( int i );
-
public short getNumber();
public short getNumber();
- public int getNumberOfGoIds();
-
public double getPerDomainEvalue();
public double getPerDomainScore();
public double getPerDomainEvalue();
public double getPerDomainScore();
- public double getPerSequenceEvalue();
-
- public double getPerSequenceScore();
-
public int getTo();
public short getTotalCount();
public int getTo();
public short getTotalCount();