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[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
protein
/
Protein.java
diff --git
a/forester/java/src/org/forester/protein/Protein.java
b/forester/java/src/org/forester/protein/Protein.java
index
6616361
..
4b81f46
100644
(file)
--- a/
forester/java/src/org/forester/protein/Protein.java
+++ b/
forester/java/src/org/forester/protein/Protein.java
@@
-46,7
+46,7
@@
public interface Protein {
* @param in_nc_order to consider order
* @return
*/
* @param in_nc_order to consider order
* @return
*/
- public boolean contains( final List<DomainId> domains, final boolean in_nc_order );
+ public boolean contains( final List<String> domains, final boolean in_nc_order );
public String getAccession();
public String getAccession();
@@
-58,11
+58,11
@@
public interface Protein {
public Domain getProteinDomain( final int index );
public Domain getProteinDomain( final int index );
- public int getProteinDomainCount( final DomainId domain_id );
+ public int getProteinDomainCount( final String domain_id );
public List<Domain> getProteinDomains();
public List<Domain> getProteinDomains();
- public List<Domain> getProteinDomains( final DomainId domain_id );
+ public List<Domain> getProteinDomains( final String domain_id );
public ProteinId getProteinId();
public ProteinId getProteinId();